A B C D E F G H I K L M N O P Q R S T V W X

A

add(Plate) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Adds a plate to the plate stack.

add(Collection<Plate>) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Adds a collection of plates to the plate stack.

add(Plate[]) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Adds an array of plates to the plate stack.

add(Integer) - Method in class com.github.jessemull.microflexinteger.plate.Well

Adds a single data point to a well.

add(Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.plate.Well

Adds a collection of numbers to the data set.

add(Integer[]) - Method in class com.github.jessemull.microflexinteger.plate.Well

Adds an array of numbers to the data set.

add(Well) - Method in class com.github.jessemull.microflexinteger.plate.Well

Adds the data from another well.

add(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.Well

Adds the data from each well in the well set.

add(WellIndex) - Method in class com.github.jessemull.microflexinteger.plate.WellList

Adds a well index.

add(Well) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Adds a well to the well set.

add(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Adds the wells in the input well set.

add(Collection<Well>) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Adds a collection of wells to the well set.

add(Well[]) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Adds an array of wells to the well set.

addGroups(WellList) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Adds a well group for analysis.

addGroups(Collection<WellList>) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Adds a collection of well groups for analysis.

addGroups(WellList[]) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Adds an array of well groups for analysis.

Addition - Class in com.github.jessemull.microflexinteger.math

This class performs addition operations with two arguments for integer plate stacks, plates, wells and well sets.

Addition() - Constructor for class com.github.jessemull.microflexinteger.math.Addition

addWells(Well) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Adds a well to the data set.

addWells(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Adds an array of wells to the data set omitting wells that are already members of the set.

addWells(Collection<Well>) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Adds a collection of wells to the data set omitting wells that are already members of the set.

addWells(Well[]) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Adds an array of wells to the data set omitting wells that are already members of the set.

allGroups() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns a well set for all analysis groups.

allJSONPlates() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing all the JSON plates in the list.

allJSONResults() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing all the JSON results in the list.

allJSONSets() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing all the JSON sets in the list.

allJSONStacks() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing all the JSON stacks in the list.

allJSONWells() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing all the JSON wells in the list.

allWells() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns the well set.

allXMLPlates() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing all the XML plates in the list.

allXMLResults() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing all the XML results in the list.

allXMLSets() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing all the XML well sets in the list.

allXMLStacks() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing all the XML stacks in the list.

allXMLWells() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing all the XML wells in the list.

alphaBase() - Method in class com.github.jessemull.microflexinteger.plate.WellPrecursor

Returns the alpha base value.

AND - Class in com.github.jessemull.microflexinteger.math

This class performs logical AND operations with two arguments for integer plate stacks, plates, wells and well sets.

AND() - Constructor for class com.github.jessemull.microflexinteger.math.AND

B

BIGDECIMAL - Static variable in class com.github.jessemull.microflexinteger.plate.WellPrecursor

BIGDECIMAL - Variable in class com.github.jessemull.microflexinteger.util.RandomUtil

BIGINTEGER - Static variable in class com.github.jessemull.microflexinteger.plate.WellPrecursor

BIGINTEGER - Variable in class com.github.jessemull.microflexinteger.util.RandomUtil

Bins - Class in com.github.jessemull.microflexinteger.stat

This class splits up integer plate stacks, plates, wells and well sets into bins based on the input thresholds.

Bins() - Constructor for class com.github.jessemull.microflexinteger.stat.Bins

byteOverflow(Double) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a double to a byte.

byteOverflow(Float) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a float to a byte.

byteOverflow(Long) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a long to a byte.

byteOverflow(Integer) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting an integer to a byte.

byteOverflow(Short) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a short to a byte.

byteOverflow(BigDecimal) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a BigDecimal to a byte.

byteOverflow(BigInteger) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a BigInteger to a byte.

C

calculate(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Addition

Adds the lists and returns the result.

calculate(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Addition

Adds the lists and returns the result using the values between the indices.

calculate(List<Integer>, int) - Method in class com.github.jessemull.microflexinteger.math.Addition

Adds the constant to each value in the list.

calculate(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.Addition

Adds the list values and the values within the array.

calculate(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.Addition

Adds the list values and the values within the array using the values between the indices.

calculate(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Addition

Adds the list values and the values within the collection.

calculate(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Addition

Adds the list values and the values within the collection.

calculate(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.AND

Ands the values in the first list by the values in the second list and returns the result.

calculate(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.AND

Ands the values in the first list by the values in the second list and returns the result using the values between the indices.

calculate(List<Integer>, int) - Method in class com.github.jessemull.microflexinteger.math.AND

Ands the values in the list by the constant.

calculate(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.AND

Ands the list by the values within the array.

calculate(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.AND

Ands the list by the values within the array between the indices.

calculate(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.AND

Ands the list values by the values within the collection.

calculate(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.AND

Ands the list values by the values within the collection.

calculate(List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Compliment

Compliments the values in the list.

calculate(List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Compliment

Compliments the values in the list between the indices.

calculate(List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Decrement

Decrements the values in the list.

calculate(List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Decrement

Decrements the values in the list between the indices.

calculate(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Division

Divides the values in the first list by the values in the second list and returns the result.

calculate(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Division

Divides the values in the first list by the values in the second list and returns the result using the values between the indices.

calculate(List<Integer>, int) - Method in class com.github.jessemull.microflexinteger.math.Division

Divides the values in the list by the constant.

calculate(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.Division

Divides the list by the values within the array.

calculate(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.Division

Divides the list by the values within the array between the indices.

calculate(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Division

Divides the list values by the values within the collection.

calculate(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Division

Divides the list values by the values within the collection.

calculate(List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Increment

Increments the values in the list.

calculate(List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Increment

Increments the values in the list between the indices.

calculate(List<Integer>, int) - Method in class com.github.jessemull.microflexinteger.math.LeftShift

Shifts the values in the list n bits to the left.

calculate(List<Integer>, int, int, int) - Method in class com.github.jessemull.microflexinteger.math.LeftShift

Shifts the values between the indices in the list n bits to the left.

calculate(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Performs the mathematical operation for the two lists.

calculate(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Performs the mathematical operation for the two lists using the values between the indices.

calculate(List<Integer>, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Performs the mathematical operation for the two lists.

calculate(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Performs the mathematical operation for the two lists.

calculate(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Performs the mathematical operation for the two lists.

calculate(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Performs the mathematical operation for the two lists.

calculate(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Performs the mathematical operation for the two lists.

calculate(List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.MathOperationIntegerUnary

Performs the mathematical operation for the list.

calculate(List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationIntegerUnary

Performs the mathematical operation for the list using the values between the indices.

calculate(List<Integer>, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationShift

Performs the mathematical operation for the two lists.

calculate(List<Integer>, int, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationShift

Performs the mathematical operation for the two lists using the values between the indices.

calculate(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Modulus

Performs the modulus operation on the values in the first list using the values in the second list and returns the result.

calculate(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Modulus

Performs the modulus operation on the values in the first list using the values in the second list between the indices and returns the result.

calculate(List<Integer>, int) - Method in class com.github.jessemull.microflexinteger.math.Modulus

Performs the modulus operation on the values in the list using the constant.

calculate(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.Modulus

Performs the modulus operation on the values in the list using the values in the array.

calculate(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.Modulus

Performs the modulus operation on the list using the values in the array between the indices.

calculate(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Modulus

Performs the modulus operation on the values in the list using the values in the collection.

calculate(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Modulus

Performs the modulus operation on the list values using the values in the collection.

calculate(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Multiplication

Multiplies the values in the first list by the values in the second list and returns the result.

calculate(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Multiplication

Multiplies the values in the first list by the values in the second list and returns the result using the values between the indices.

calculate(List<Integer>, int) - Method in class com.github.jessemull.microflexinteger.math.Multiplication

Multiplies the values in the list by the constant.

calculate(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.Multiplication

Multiplies the list by the values within the array.

calculate(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.Multiplication

Multiplies the list by the values within the array between the indices.

calculate(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Multiplication

Multiplies the list values by the values within the collection.

calculate(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Multiplication

Multiplies the list values by the values within the collection.

calculate(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.OR

Ors the values in the first list by the values in the second list and returns the result.

calculate(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.OR

Ors the values in the first list by the values in the second list and returns the result using the values between the indices.

calculate(List<Integer>, int) - Method in class com.github.jessemull.microflexinteger.math.OR

Ors the values in the list by the constant.

calculate(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.OR

Ors the list by the values within the array.

calculate(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.OR

Ors the list by the values within the array between the indices.

calculate(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.OR

Ors the list values by the values within the collection.

calculate(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.OR

Ors the list values by the values within the collection.

calculate(List<Integer>, int) - Method in class com.github.jessemull.microflexinteger.math.RightShiftArithmetic

Shifts the values in the list n bits to the right.

calculate(List<Integer>, int, int, int) - Method in class com.github.jessemull.microflexinteger.math.RightShiftArithmetic

Shifts the values between the indices in the list n bits to the right.

calculate(List<Integer>, int) - Method in class com.github.jessemull.microflexinteger.math.RightShiftLogical

Shifts the values in the list n bits to the right.

calculate(List<Integer>, int, int, int) - Method in class com.github.jessemull.microflexinteger.math.RightShiftLogical

Shifts the values between the indices in the list n bits to the right.

calculate(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Subtraction

Subtracts the values in the second list from the values in the first list and returns the result.

calculate(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Subtraction

Subtracts the values in the second list from the values in the first list using the values between the indices and returns the result.

calculate(List<Integer>, int) - Method in class com.github.jessemull.microflexinteger.math.Subtraction

Subtracts the constant from each value in the list.

calculate(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.Subtraction

Subtracts the values in the array from the values in the list.

calculate(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.Subtraction

Subtracts the values in the array from the values between the indices in the list.

calculate(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Subtraction

Subtracts the values in the collection from the values in the list.

calculate(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Subtraction

Subtracts the value in the collection from the values in the list.

calculate(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.XOR

Xors the values in the first list by the values in the second list and returns the result.

calculate(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.XOR

Xors the values in the first list by the values in the second list and returns the result using the values between the indices.

calculate(List<Integer>, int) - Method in class com.github.jessemull.microflexinteger.math.XOR

Xors the values in the list by the constant.

calculate(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.XOR

Xors the list by the values within the array.

calculate(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.XOR

Xors the list by the values within the array between the indices.

calculate(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.XOR

Xors the list values by the values within the collection.

calculate(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.XOR

Xors the list values by the values within the collection.

calculate(List<Double>, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.Bins

Splits the list into equal bins.

calculate(List<Double>, int, int, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.Bins

Splits the values between the beginning and ending indices into equal bins.

calculate(List<Double>, int) - Method in class com.github.jessemull.microflexinteger.stat.CentralMoment

Calculates the pth central moment.

calculate(List<Double>, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.CentralMoment

Calculates the pth central moment using the values between the beginning and ending indices.

calculate(List<Double>, int) - Method in class com.github.jessemull.microflexinteger.stat.Chunks

Splits the list into chunks.

calculate(List<Double>, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Chunks

Splits the values between the beginning and ending indices into chunks.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.CoefficientOfVariation

Calculates the coefficient of variation.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.CoefficientOfVariation

Calculates the coefficient of variation of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.ContraharmonicMean

Calculates the contra-harmonic mean.

calculate(List<Double>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.ContraharmonicMean

Calculates the weighted contra-harmonic mean.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.ContraharmonicMean

Calculates the contra-harmonic mean of the values between the beginning and ending indices.

calculate(List<Double>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.ContraharmonicMean

Calculates the weighted contra-harmonic mean of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.CumulativeProduct

Calculates the cumulative product.

calculate(List<Double>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.CumulativeProduct

Calculates the weighted cumulative product.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.CumulativeProduct

Calculates the cumulative product of the values between the beginning and ending indices.

calculate(List<Double>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.CumulativeProduct

Calculates the weighted cumulative product of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.CumulativeSum

Calculates the cumulative sum.

calculate(List<Double>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.CumulativeSum

Calculates the weighted cumulative sum.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.CumulativeSum

Calculates the cumulative sum of the values between the beginning and ending indices.

calculate(List<Double>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.CumulativeSum

Calculates the weighted cumulative sum of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Calculates the statistic.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Calculates the statistic of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Calculates the statistic.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Calculates the statistic of the values between the beginning and ending indices.

calculate(List<Double>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Calculates the weighted statistic.

calculate(List<Double>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Calculates the weighted statistic of the values between the beginning and ending indices.

calculate(List<Double>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Calculates the weighted statistic.

calculate(List<Double>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Calculates the weighted statistic of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.Differences

Calculates the successive differences.

calculate(List<Double>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.Differences

Calculates the weighted successive differences.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Differences

Calculates the successive differences of the values between the beginning and ending indices.

calculate(List<Double>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.Differences

Calculates the weighted successive differences of the values between the beginning and ending indices.

calculate(List<Double>, int) - Method in class com.github.jessemull.microflexinteger.stat.EqualBins

Splits the list into equal bins.

calculate(List<Double>, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.EqualBins

Splits the values between the beginning and ending indices into equal bins.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.GeometricMean

Calculates the geometric mean.

calculate(List<Double>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.GeometricMean

Calculates the weighted geometric mean.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.GeometricMean

Calculates the geometric mean of the values between the beginning and ending indices.

calculate(List<Double>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.GeometricMean

Calculates the weighted geometric mean of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.HarmonicMean

Calculates the harmonic mean.

calculate(List<Double>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.HarmonicMean

Calculates the weighted harmonic mean.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.HarmonicMean

Calculates the harmonic mean of the values between the beginning and ending indices.

calculate(List<Double>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.HarmonicMean

Calculates the weighted harmonic mean of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.InterquartileRange

Calculates the inter-quartile range.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.InterquartileRange

Calculates the inter-quartile range of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.Kurtosis

Calculates the kurtosis.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Kurtosis

Calculates the kurtosis of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.Max

Calculates the maximum value.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Max

Calculates the maximum value between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.Mean

Calculates the geometric mean.

calculate(List<Double>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.Mean

Calculates the weighted geometric mean.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Mean

Calculates the geometric mean of the values between the beginning and ending indices.

calculate(List<Double>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.Mean

Calculates the weighted geometric mean of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.MeanDeviation

Calculates the mean deviation value.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.MeanDeviation

Calculates the mean deviation using the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.Median

Calculates the median.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Median

Calculates the median of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.MedianDeviation

Calculates the median deviation.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.MedianDeviation

Calculates the median deviation of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.Min

Calculates the mean.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Min

Calculates the minimum value between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.Mode

Calculates the mode.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Mode

Calculates the mode using the values between the beginning and ending indices.

calculate(List<Double>, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Calculates the percentile.

calculate(List<Double>, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Calculates the percentile of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.PopulationStandardDeviation

Calculates the standard deviation.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.PopulationStandardDeviation

Calculates the standard deviation of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.PopulationVariance

Calculates the population variance.

calculate(List<Double>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.PopulationVariance

Calculates the weighted population variance.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.PopulationVariance

Calculates the population variance of the values between the beginning and ending indices.

calculate(List<Double>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.PopulationVariance

Calculates the weighted population variance of the values between the beginning and ending indices.

calculate(List<Double>, int) - Method in class com.github.jessemull.microflexinteger.stat.PowerDeviation

Calculates the pth power deviation.

calculate(List<Double>, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.PowerDeviation

Calculates the pth power deviation using the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.Product

Calculates the product.

calculate(List<Double>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.Product

Calculates the weighted product.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Product

Calculates the product of the values between the beginning and ending indices.

calculate(List<Double>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.Product

Calculates the weighted product of the values between the beginning and ending indices.

calculate(List<Double>, double) - Method in class com.github.jessemull.microflexinteger.stat.Quantile

Calculates the quantile.

calculate(List<Double>, int, int, double) - Method in class com.github.jessemull.microflexinteger.stat.Quantile

Calculates the quantile of the values between the beginning and ending indices.

calculate(List<Double>, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Calculates the statistic.

calculate(List<Double>, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Calculates the statistic of the values between the beginning and ending indices.

calculate(List<Double>, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Calculates the statistic.

calculate(List<Double>, int, int, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Calculates the statistic of the values between the beginning and ending indices.

calculate(List<Double>, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Calculates the statistic.

calculate(List<Double>, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Calculates the statistic of the values between the beginning and ending indices.

calculate(List<Double>, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Calculates the statistic.

calculate(List<Double>, int, int, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Calculates the statistic of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuartileDeviation

Calculates the quartile deviation.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuartileDeviation

Calculates the quartile deviation of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.Quartiles

Returns the quartile for the data set.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Quartiles

Returns the quartiles from the data set using the values between the indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuartileSkewness

Calculates the quartile skewness.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuartileSkewness

Calculates the quartile skewness of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.RandomSample

Returns a random sample from the data set.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.RandomSample

Returns a random sample from the data set using the values between the indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.Range

Calculates the range.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Range

Calculates the range for the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.SampleStandardDeviation

Calculates the standard deviation.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.SampleStandardDeviation

Calculates the standard deviation of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.SampleVariance

Calculates the sample variance.

calculate(List<Double>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.SampleVariance

Calculates the weighted sample variance.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.SampleVariance

Calculates the sample variance of the values between the beginning and ending indices.

calculate(List<Double>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.SampleVariance

Calculates the weighted sample variance of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.Shuffle

Returns the shuffled values.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Shuffle

Returns the shuffled values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.Skewness

Calculates the skewness.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Skewness

Calculates the skewness of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.StandardError

Calculates the standard error.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.StandardError

Calculates the standard error of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.Sum

Calculates the sum.

calculate(List<Double>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.Sum

Calculates the weighted sum.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Sum

Calculates the sum of the values between the beginning and ending indices.

calculate(List<Double>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.Sum

Calculates the weighted sum of the values between the beginning and ending indices.

calculate(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.SumOfSquares

Calculates the sum.

calculate(List<Double>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.SumOfSquares

Calculates the weighted sum.

calculate(List<Double>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.SumOfSquares

Calculates the sum of the values between the beginning and ending indices.

calculate(List<Double>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.SumOfSquares

Calculates the weighted sum of the values between the beginning and ending indices.

calculateStrict(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Addition

Adds the lists and returns the result.

calculateStrict(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Addition

Adds the lists and returns the result using the values between the indices.

calculateStrict(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.Addition

Adds the list values and the values within the array.

calculateStrict(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.Addition

Adds the list values and the values within the array using the values between the indices.

calculateStrict(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Addition

Adds the list values and the values within the collection.

calculateStrict(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Addition

Adds the list the values and the values within the collection using the values between the indices.

calculateStrict(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.AND

Ands the values in the first list by the values in the second list and returns the result.

calculateStrict(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.AND

Ands the lists and returns the result using the values between the indices.

calculateStrict(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.AND

Ands the list values by the values within the array.

calculateStrict(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.AND

Ands the list values by the values within the array between the indices.

calculateStrict(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.AND

Ands the list values by the values within the collection.

calculateStrict(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.AND

Ands the list the values by the values within the collection between the indices.

calculateStrict(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Division

Divides the values in the first list by the values in the second list and returns the result.

calculateStrict(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Division

Divides the lists and returns the result using the values between the indices.

calculateStrict(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.Division

Divides the list values by the values within the array.

calculateStrict(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.Division

Divides the list values by the values within the array between the indices.

calculateStrict(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Division

Divides the list values by the values within the collection.

calculateStrict(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Division

Divides the list the values by the values within the collection between the indices.

calculateStrict(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Performs the mathematical operation for the two lists.

calculateStrict(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Performs the mathematical operation for the two lists.

calculateStrict(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Performs the mathematical operation for the two lists.

calculateStrict(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Performs the mathematical operation for the two lists.

calculateStrict(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Performs the mathematical operation for the two lists.

calculateStrict(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Performs the mathematical operation for the two lists.

calculateStrict(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Modulus

Performs the modulus operation on the values in the first list using the values in the second list and returns the result.

calculateStrict(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Modulus

Performs the modulus operation on the values in the first list using the values in the second list between the indices and returns the result.

calculateStrict(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.Modulus

Performs the modulus operation on the list values using the values within the array.

calculateStrict(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.Modulus

Performs the modulus operation on the list values using the values within the array between the indices.

calculateStrict(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Modulus

Performs the modulus operation on the list values using the values within the collection.

calculateStrict(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Modulus

Performs the modulus operation on the list using the values in the collection between the indices.

calculateStrict(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Multiplication

Multiplies the values in the first list by the values in the second list and returns the result.

calculateStrict(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Multiplication

Multiplies the lists and returns the result using the values between the indices.

calculateStrict(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.Multiplication

Multiplies the list values by the values within the array.

calculateStrict(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.Multiplication

Multiplies the list values by the values within the array between the indices.

calculateStrict(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Multiplication

Multiplies the list values by the values within the collection.

calculateStrict(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Multiplication

Multiplies the list values by the values within the collection between the indices.

calculateStrict(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.OR

Ors the values in the first list by the values in the second list and returns the result.

calculateStrict(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.OR

Ors the lists and returns the result using the values between the indices.

calculateStrict(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.OR

Ors the list values by the values within the array.

calculateStrict(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.OR

Ors the list values by the values within the array between the indices.

calculateStrict(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.OR

Ors the list values by the values within the collection.

calculateStrict(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.OR

Ors the list the values by the values within the collection between the indices.

calculateStrict(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Subtraction

Subtracts the values in the second list from the values in the first list and returns the result.

calculateStrict(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Subtraction

Subtracts the values in the second list from the values in the first list using the values between the indices and returns the result.

calculateStrict(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.Subtraction

Subtracts the values in the array from the values in the list.

calculateStrict(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.Subtraction

Subtracts the values in the array from the values in the list between the indices.

calculateStrict(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.Subtraction

Subtracts the values in the collection from the values in the list.

calculateStrict(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.Subtraction

Subtracts the values in the collection from the values in the list between the indices.

calculateStrict(List<Integer>, List<Integer>) - Method in class com.github.jessemull.microflexinteger.math.XOR

Xors the values in the first list by the values in the second list and returns the result.

calculateStrict(List<Integer>, List<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.XOR

Xors the lists and returns the result using the values between the indices.

calculateStrict(List<Integer>, int[]) - Method in class com.github.jessemull.microflexinteger.math.XOR

Xors the list values by the values within the array.

calculateStrict(List<Integer>, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.XOR

Xors the list values by the values within the array between the indices.

calculateStrict(List<Integer>, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.XOR

Xors the list values by the values within the collection.

calculateStrict(List<Integer>, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.XOR

Xors the list the values by the values within the collection between the indices.

ceiling(Well) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the least well in this set greater than or equal to the given well, or null if there is no such well.

ceiling(Plate) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the least plate in this set greater than or equal to the given plate, or null if there is no such plate.

ceiling(Well) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns the least well in this set greater than or equal to the given well, or null if there is no such well.

CentralMoment - Class in com.github.jessemull.microflexinteger.stat

This class calculates the pth central moment for integer plate stacks, plates, wells and well sets.

CentralMoment() - Constructor for class com.github.jessemull.microflexinteger.stat.CentralMoment

Chunks - Class in com.github.jessemull.microflexinteger.stat

This splits up integer plate stacks, plates, wells and well sets into sublists of size p.

Chunks() - Constructor for class com.github.jessemull.microflexinteger.stat.Chunks

clear() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Clears the stack.

clear() - Method in class com.github.jessemull.microflexinteger.plate.Well

Clears the well data.

clear() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Clears the set.

clearGroups() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Clears all groups.

clearWells() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Removes all plate wells.

CoefficientOfVariation - Class in com.github.jessemull.microflexinteger.stat

This class calculates the coefficient of variation of integer plate stacks, plates, wells and well sets as the square root of the unbiased sample variance.

CoefficientOfVariation() - Constructor for class com.github.jessemull.microflexinteger.stat.CoefficientOfVariation

column() - Method in class com.github.jessemull.microflexinteger.plate.WellIndex

Returns the column index.

column() - Method in class com.github.jessemull.microflexinteger.plate.WellPrecursor

Returns the column number.

columns() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the number of columns.

columns() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the column number.

COLUMNS_12WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

COLUMNS_12WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

COLUMNS_1536WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

COLUMNS_1536WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

COLUMNS_24WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

COLUMNS_24WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

COLUMNS_384WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

COLUMNS_384WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

COLUMNS_48WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

COLUMNS_48WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

COLUMNS_6WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

COLUMNS_6WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

COLUMNS_96WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

COLUMNS_96WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

com.github.jessemull.microflexinteger.io - package com.github.jessemull.microflexinteger.io

com.github.jessemull.microflexinteger.math - package com.github.jessemull.microflexinteger.math

com.github.jessemull.microflexinteger.plate - package com.github.jessemull.microflexinteger.plate

com.github.jessemull.microflexinteger.stat - package com.github.jessemull.microflexinteger.stat

com.github.jessemull.microflexinteger.util - package com.github.jessemull.microflexinteger.util

compare(Plate, Plate) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Plates are ordered using the size, data type, label and number of sets.

compareTo(Plate) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Compares the object to another plate.

compareTo(WellIndex) - Method in class com.github.jessemull.microflexinteger.plate.WellIndex

Compares two well indices.

compareTo(WellList) - Method in class com.github.jessemull.microflexinteger.plate.WellList

Plates are ordered using the size, data type, label and number of sets.

compareTo(WellPrecursor<T>) - Method in class com.github.jessemull.microflexinteger.plate.WellPrecursor

Wells are ordered based on row and column number.

compareTo(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Compares two well set objects.

Compliment - Class in com.github.jessemull.microflexinteger.math

This class performs compliment operations with a single argument for integer plate stacks, plates, wells and well sets.

Compliment() - Constructor for class com.github.jessemull.microflexinteger.math.Compliment

contains(Well) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns true if the well is part of the well set.

contains(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns true if all the input wells are found within the well set.

contains(Collection<Well>) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns true if all the input wells are found within the well set.

contains(Well[]) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns true if all the input wells are found within the plate.

contains(String, String) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns true if all the wells in the delimiter separated list exist in the plate.

contains(String) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns true if the well is part of the well set.

contains(WellIndex) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns true if a well with the index exists.

contains(WellList) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns true if the wells in the list exist.

contains(Plate) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns true if the plate exists in the stack.

contains(Collection<Plate>) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns true if all the input plates are found within the stack.

contains(Plate[]) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns true if all the input plates are found within the stack.

contains(String) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns true if a plate with the label exists in the stack.

contains(List<String>) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns true if all the plates in the list exist in the stack.

contains(Integer) - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns true if the well data set contains the value.

contains(Well) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns true if the well is part of the well set.

contains(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns true if all the input wells are found within the well set.

contains(Collection<Well>) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns true if all the input wells are found within the well set.

contains(Well[]) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns true if all the input wells are found within the well array.

contains(String, String) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns true if the wells are part of the set.

contains(String) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns true if the well is part of the well set.

contains(WellIndex) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns true if the well is part of the set.

contains(WellList) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns true if the wells exist in the set.

containsGroup(String) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns true if the group exists.

containsGroup(List<String>) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns true if groups with all the labels exist.

containsGroup(WellList) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns true if the group exists.

containsGroup(Collection<WellList>) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns true if the groups in the collection exist.

containsGroup(WellList[]) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns true if the groups in the array exist.

ContraharmonicMean - Class in com.github.jessemull.microflexinteger.stat

This class calculates the contra-harmonic mean of integer plate stacks, plates, wells and well sets.

ContraharmonicMean() - Constructor for class com.github.jessemull.microflexinteger.stat.ContraharmonicMean

CumulativeProduct - Class in com.github.jessemull.microflexinteger.stat

This class calculates the cumulative product of integer plate stacks, plates, wells and well sets.

CumulativeProduct() - Constructor for class com.github.jessemull.microflexinteger.stat.CumulativeProduct

CumulativeSum - Class in com.github.jessemull.microflexinteger.stat

This class calculates the cumulative sum of integer plate stacks, plates, wells and well sets.

CumulativeSum() - Constructor for class com.github.jessemull.microflexinteger.stat.CumulativeSum

D

data() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the data set.

data() - Method in class com.github.jessemull.microflexinteger.plate.WellPrecursor

dataSet() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the data set.

dataType() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the data type as an integer value.

dataType() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the data type as an integer value.

dataTypeString() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the data type as a string.

dataTypeString() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the data type as a string.

Decrement - Class in com.github.jessemull.microflexinteger.math

This class performs decrement operations with a single argument for integer plate stacks, plates, wells and well sets.

Decrement() - Constructor for class com.github.jessemull.microflexinteger.math.Decrement

descendingIterator() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns an iterator over the wells in this set in descending order.

descendingIterator() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns an iterator over the plates in this set in descending order.

descendingIterator() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns an iterator over the wells in this set in descending order.

descendingSet() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns a reverse order view of the wells contained in this set.

descendingSet() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns a reverse order view of the plates contained in this set.

descendingSet() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a reverse order view of the wells contained in this set.

DescriptiveStatistic - Class in com.github.jessemull.microflexinteger.stat

This class performs statistical operations for integer plate stacks, plates, wells and well sets.

DescriptiveStatistic() - Constructor for class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

DescriptiveStatisticList - Class in com.github.jessemull.microflexinteger.stat

This class performs statistical operations for integer plate stacks, plates, wells and well sets with calculate methods returning a list of results.

DescriptiveStatisticList() - Constructor for class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

DescriptiveStatisticListWeights - Class in com.github.jessemull.microflexinteger.stat

This class performs weighted statistical operations for integer plate stacks, plates, wells and well sets with calculate methods that return a list of results.

DescriptiveStatisticListWeights() - Constructor for class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

DescriptiveStatisticWeights - Class in com.github.jessemull.microflexinteger.stat

This class performs weighted statistical operations for integer plate stacks, plates, wells and well sets.

DescriptiveStatisticWeights() - Constructor for class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

descriptor() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the descriptor.

descriptor() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the descriptor.

Differences - Class in com.github.jessemull.microflexinteger.stat

This class calculates the successive differences of integer plate stacks, plates, wells and well sets.

Differences() - Constructor for class com.github.jessemull.microflexinteger.stat.Differences

Division - Class in com.github.jessemull.microflexinteger.math

This class performs division operations with two arguments for integer plate stacks, plates, wells and well sets.

Division() - Constructor for class com.github.jessemull.microflexinteger.math.Division

DOUBLE - Static variable in class com.github.jessemull.microflexinteger.plate.WellPrecursor

DOUBLE - Variable in class com.github.jessemull.microflexinteger.util.RandomUtil

doubleOverflow(BigDecimal) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a BigDecimal to an double.

doubleOverflow(BigInteger) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a BigInteger to an double.

E

EqualBins - Class in com.github.jessemull.microflexinteger.stat

This splits up integer plate stacks, plates, wells and well sets into sublists into bins spaced evenly between the maximum and minimum values.

EqualBins() - Constructor for class com.github.jessemull.microflexinteger.stat.EqualBins

equals(Object) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Plates are equivalent if they share the same dimensions, label, plate type, data type, descriptor, size and well sets.

equals(Object) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Plate stacks are equivalent if they contain the same plates.

equals(Object) - Method in class com.github.jessemull.microflexinteger.plate.Well

Wells are equivalent if the row, column and ALPHA_BASE fields are equivalent.

equals(Object) - Method in class com.github.jessemull.microflexinteger.plate.WellIndex

Indicies with the same row and column are equivalent.

equals(Object) - Method in class com.github.jessemull.microflexinteger.plate.WellList

Lists are equivalent if they contain the same wells.

equals(Object) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Well sets are equivalent if they contain the same wells and label.

equalsSet(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.WellList

Returns true if the well set contains the same wells.

exp(BigDecimal) - Static method in class com.github.jessemull.microflexinteger.util.ImmutableMathUtil

Raises e to the power of the input big decimal.

exp(BigDecimal, MathContext) - Static method in class com.github.jessemull.microflexinteger.util.ImmutableMathUtil

Returns e raised to the input power using a Taylor expansion with

F

first() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the first well in the set.

first() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the first plate in the set.

first() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns the first well in the set.

floatOverflow(Double) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a double to an float.

floatOverflow(BigDecimal) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a BigDecimal to an float.

floatOverflow(BigInteger) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a BigInteger to an float.

floor(Well) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the greatest well in this set less than or equal to the given well, or null if there is no such well.

floor(Plate) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the greatest plate in this set less than or equal to the given plate, or null if there is no such plate.

floor(Well) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns the greatest well in this set less than or equal to the given well, or null if there is no such well.

G

GeometricMean - Class in com.github.jessemull.microflexinteger.stat

This class calculates the geometric mean of integer plate stacks, plates, wells and well sets as the nth root of the product of n numbers.

GeometricMean() - Constructor for class com.github.jessemull.microflexinteger.stat.GeometricMean

get(int) - Method in class com.github.jessemull.microflexinteger.io.PlateListPOJO

Returns the plate at the indicated index.

get(int) - Method in class com.github.jessemull.microflexinteger.io.PlateListXML

Returns the plate at the indicated index.

get(int) - Method in class com.github.jessemull.microflexinteger.io.ResultListPOJO

Returns the result at the indicated index.

get(int) - Method in class com.github.jessemull.microflexinteger.io.ResultListXML

Returns the result at the index as a well set.

get(int) - Method in class com.github.jessemull.microflexinteger.io.StackListPOJO

Returns the stack at the indicated index.

get(int) - Method in class com.github.jessemull.microflexinteger.io.StackListXML

Returns the stack at the indicated index.

get(int) - Method in class com.github.jessemull.microflexinteger.io.WellListPOJO

Returns the well at the indicated index.

get(int) - Method in class com.github.jessemull.microflexinteger.io.WellListXML

Returns the XML well at the indicated index.

get(int) - Method in class com.github.jessemull.microflexinteger.io.WellSetListPOJO

Returns the well set at the indicated index.

get(int) - Method in class com.github.jessemull.microflexinteger.io.WellSetListXML

Returns the XML well set at the indicated index.

get(String) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the plate with the input label or null if no such plate exists.

get(List<String>) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns all the plates with a label found in the input list or null if none of the plates exist.

get(Plate) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the plate or null if not such plate exists.

get(Collection<Plate>) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the plates in the collection or null if none of the plates exist.

get(Plate[]) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns plates in the array or null if none of the plates exist.

get(int) - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the value at the specified index.

getAll() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns all the plates in the stack as a set.

getColumn(int) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns all wells with the matching column index.

getColumn(int) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns all wells with the matching column index.

getColumns() - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Returns the column number.

getColumns() - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Returns the column number.

getColumns() - Method in class com.github.jessemull.microflexinteger.io.StackPOJO

Returns the column number.

getColumns() - Method in class com.github.jessemull.microflexinteger.io.StackXML

Returns the column number.

getDelimiter() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns the delimiter.

getDelimiter() - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns the delimiter.

getDescriptor() - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Returns the descriptor.

getDescriptor() - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Returns the descriptor.

getGroups(String) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns a well set containing the wells for the group with the given label.

getGroups(WellList) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns a well set containing the wells for the group.

getGroups(Collection<WellList>) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns a well set containing the wells for each group.

getGroups(WellList[]) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns a well set containing the wells for each group.

getGroups(List<String>) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns all wells with a label contained in the input list.

getIndex() - Method in class com.github.jessemull.microflexinteger.io.ResultWellXML

Returns the index.

getIndex() - Method in class com.github.jessemull.microflexinteger.io.SimpleWellPOJO

Returns the index.

getIndex() - Method in class com.github.jessemull.microflexinteger.io.SimpleWellXML

Returns the index.

getIndex() - Method in class com.github.jessemull.microflexinteger.io.WellPOJO

Returns the index.

getIndex() - Method in class com.github.jessemull.microflexinteger.io.WellXML

Returns the index.

getLabel() - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Returns the stack label.

getLabel() - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Returns the stack label.

getLabel() - Method in class com.github.jessemull.microflexinteger.io.ResultPOJO

Returns the result label.

getLabel() - Method in class com.github.jessemull.microflexinteger.io.ResultXML

Returns the label.

getLabel() - Method in class com.github.jessemull.microflexinteger.io.SimpleWellSetPOJO

Returns the set label.

getLabel() - Method in class com.github.jessemull.microflexinteger.io.SimpleWellSetXML

Returns the set label.

getLabel() - Method in class com.github.jessemull.microflexinteger.io.StackPOJO

Returns the stack label.

getLabel() - Method in class com.github.jessemull.microflexinteger.io.StackXML

Returns the stack label.

getLabel() - Method in class com.github.jessemull.microflexinteger.io.WellSetPOJO

Returns the set label.

getLabel() - Method in class com.github.jessemull.microflexinteger.io.WellSetXML

Returns the set label.

getPlates() - Method in class com.github.jessemull.microflexinteger.io.PlateListPOJO

Returns the list of plate POJOs.

getPlates() - Method in class com.github.jessemull.microflexinteger.io.PlateListXML

Returns the xml plate list.

getPlates() - Method in class com.github.jessemull.microflexinteger.io.StackPOJO

Returns the list of plates in the stack.

getPlates() - Method in class com.github.jessemull.microflexinteger.io.StackXML

Returns the list of plates in the stack.

getResults() - Method in class com.github.jessemull.microflexinteger.io.ResultListPOJO

Gets the list of result POJOs.

getResults() - Method in class com.github.jessemull.microflexinteger.io.ResultListXML

Gets the list of XML results.

getRow(int) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns all wells with the matching row index.

getRow(int) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns all wells with the matching row index.

getRows() - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Returns the row number.

getRows() - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Returns the row number.

getRows() - Method in class com.github.jessemull.microflexinteger.io.StackPOJO

Returns the row number.

getRows() - Method in class com.github.jessemull.microflexinteger.io.StackXML

Returns the row number.

getSize() - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Returns the size.

getSize() - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Returns the size.

getSize() - Method in class com.github.jessemull.microflexinteger.io.ResultPOJO

Returns the size of the well results array.

getSize() - Method in class com.github.jessemull.microflexinteger.io.ResultXML

Returns the size of the well list.

getSize() - Method in class com.github.jessemull.microflexinteger.io.SimpleWellSetPOJO

Returns the size of the values array.

getSize() - Method in class com.github.jessemull.microflexinteger.io.SimpleWellSetXML

Returns the size of the values array.

getSize() - Method in class com.github.jessemull.microflexinteger.io.StackPOJO

Returns the size.

getSize() - Method in class com.github.jessemull.microflexinteger.io.StackXML

Returns the size.

getSize() - Method in class com.github.jessemull.microflexinteger.io.WellPOJO

Returns the size of the values array.

getSize() - Method in class com.github.jessemull.microflexinteger.io.WellSetPOJO

Returns the size of the values array.

getSize() - Method in class com.github.jessemull.microflexinteger.io.WellSetXML

Returns the size of the values array.

getSize() - Method in class com.github.jessemull.microflexinteger.io.WellXML

Returns the size of the values array.

getStacks() - Method in class com.github.jessemull.microflexinteger.io.StackListPOJO

Gets the list of stack POJOs.

getStacks() - Method in class com.github.jessemull.microflexinteger.io.StackListXML

Gets the list of XML stacks.

getType() - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Returns the data type.

getType() - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Returns the data type.

getType() - Method in class com.github.jessemull.microflexinteger.io.ResultPOJO

Returns the numerical type as a string.

getType() - Method in class com.github.jessemull.microflexinteger.io.ResultXML

Returns the numerical type as a string.

getType() - Method in class com.github.jessemull.microflexinteger.io.StackPOJO

Returns the data type.

getType() - Method in class com.github.jessemull.microflexinteger.io.StackXML

Returns the data type.

getType() - Method in class com.github.jessemull.microflexinteger.io.WellPOJO

Returns the numerical type as a string.

getType() - Method in class com.github.jessemull.microflexinteger.io.WellSetPOJO

Returns the data set type.

getType() - Method in class com.github.jessemull.microflexinteger.io.WellSetXML

Returns the data set type.

getType() - Method in class com.github.jessemull.microflexinteger.io.WellXML

Returns the numerical type as a string.

getValue() - Method in class com.github.jessemull.microflexinteger.io.ResultWellXML

Returns the value.

getValues() - Method in class com.github.jessemull.microflexinteger.io.SimpleWellPOJO

Returns the values array.

getValues() - Method in class com.github.jessemull.microflexinteger.io.SimpleWellXML

Returns the values array.

getValues() - Method in class com.github.jessemull.microflexinteger.io.WellPOJO

Returns the values array.

getValues() - Method in class com.github.jessemull.microflexinteger.io.WellXML

Returns the values array.

getWells() - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Returns the list of wells.

getWells() - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Returns the list of wells.

getWells() - Method in class com.github.jessemull.microflexinteger.io.ResultPOJO

Returns the map of result results.

getWells() - Method in class com.github.jessemull.microflexinteger.io.ResultXML

Returns the well list.

getWells() - Method in class com.github.jessemull.microflexinteger.io.SimpleWellSetPOJO

Returns the list of well indices.

getWells() - Method in class com.github.jessemull.microflexinteger.io.SimpleWellSetXML

Returns the list of well indices.

getWells() - Method in class com.github.jessemull.microflexinteger.io.WellListPOJO

Gets the list of well POJOs.

getWells() - Method in class com.github.jessemull.microflexinteger.io.WellListXML

Gets the list of XML wells.

getWells() - Method in class com.github.jessemull.microflexinteger.io.WellSetPOJO

Returns the list of set wells.

getWells() - Method in class com.github.jessemull.microflexinteger.io.WellSetXML

Returns the list of set wells.

getWells(Well) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the well or null if no such well exists.

getWells(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the well or null if no such well exists.

getWells(Collection<Well>) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the well or null if no such well exists.

getWells(Well[]) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the well or null if no such well exists.

getWells(String, String) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns a well set holding all plate wells that match the indices or null if there are no matches.

getWells(String) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the well with the input indices.

getWells(WellIndex) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the well with the input index.

getWells(WellList) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the wells in the input list.

getWells(Well) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns the well or null if no such well exists.

getWells(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a well set holding all plate wells that match the indices or null if there are no matches.

getWells(Collection<Well>) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a well set holding all plate wells that match the indices or null if there are no matches.

getWells(Well[]) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a well set holding all wells that match the indices or null if there are no matches.

getWells(String, String) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a well set holding all plate wells that match the indices or null if there are no matches.

getWells(String) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns the well with the input indices.

getWells(WellIndex) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns the well or null if the well does not exist.

getWells(WellList) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a well set containing the wells in the list or null if none of the wells exist.

getWellsets() - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Returns the list of well sets.

getWellsets() - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Returns the list of well sets.

getWellsets() - Method in class com.github.jessemull.microflexinteger.io.WellSetListPOJO

Returns the list of sets.

getWellsets() - Method in class com.github.jessemull.microflexinteger.io.WellSetListXML

Returns the list of XML sets.

H

HarmonicMean - Class in com.github.jessemull.microflexinteger.stat

This class calculates the harmonic mean of integer plate stacks, plates, wells and well sets.

HarmonicMean() - Constructor for class com.github.jessemull.microflexinteger.stat.HarmonicMean

hashCode() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Hash code uses the plate dimensions, label, plate type, data type, descriptor, size and well sets.

hashCode() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Hash code using the rows, columns, data type, label and stack fields.

hashCode() - Method in class com.github.jessemull.microflexinteger.plate.WellIndex

Hash code uses the row and column.

hashCode() - Method in class com.github.jessemull.microflexinteger.plate.WellList

Hash code uses the label and the indices in the list.

hashCode() - Method in class com.github.jessemull.microflexinteger.plate.WellPrecursor

Hash code uses the row, column and ALPHA_BASE fields.

hashCode() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Hash code uses the wells and label.

hasNextJSONPlate() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the next plate POJO in the list is a valid plate.

hasNextJSONResult() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the next result POJO in the list is a valid result.

hasNextJSONSet() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the next set POJO in the list is a valid set.

hasNextJSONStack() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the next stack POJO in the list is a valid stack.

hasNextJSONWell() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the next well POJO in the list is a valid well.

hasNextMap() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the scanner has another plate map in its input.

hasNextTable() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the scanner has another table of wells in its input.

hasNextXMLPlate() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the next XML plate in the list is a valid plate.

hasNextXMLResult() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the next XML result in the list is a valid result.

hasNextXMLSet() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the next XML well set in the list is a valid well set.

hasNextXMLStack() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the next XML stack in the list is a valid stack.

hasNextXMLWell() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the next XML well in the list is a valid well.

hasPreviousJSONPlate() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the previous plate POJO in the list is a valid plate.

hasPreviousJSONResult() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the previous result POJO in the list is a valid result.

hasPreviousJSONSet() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the previous set POJO in the list is a valid set.

hasPreviousJSONStack() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the previous stack POJO in the list is a valid stack.

hasPreviousJSONWell() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the previous well POJO in the list is a valid well.

hasPreviousXMLPlate() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the previous XML plate in the list is a valid plate.

hasPreviousXMLResult() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the previous XML result in the list is a valid result.

hasPreviousXMLSet() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the previous XML well set in the list is a valid well set.

hasPreviousXMLStack() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the previous XML stack in the list is a valid stack.

hasPreviousXMLWell() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns true if the the previous XML well in the list is a valid well.

headSet(Well) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns a view of the portion of this set whose wells are strictly less than the input well.

headSet(Well, boolean) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns a view of the portion of this set whose wells are less than (or equal to, if inclusive is true) to the input well.

headSet(Plate) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns a view of the portion of this set whose plates are strictly less than the input plate.

headSet(Plate, boolean) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns a view of the portion of this set whose plates are less than (or equal to, if inclusive is true) to the input plate.

headSet(Well) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a view of the portion of this set whose wells are strictly less than the input well.

headSet(Well, boolean) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a view of the portion of this set whose wells are less than (or equal to, if inclusive is true) to the input well.

headSet(int) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a view of the portion of this set whose wells are less than or equal to the index.

headSet(int, boolean) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a view of the portion of this set whose wells are less than (or equal to, if inclusive is true) the index.

higher(Well) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the least well in this set strictly greater than the given well, or null if there is no such well.

higher(Plate) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the least plate in this set strictly greater than the given plate, or null if there is no such plate.

higher(Well) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns the least well in this set strictly greater than the given well, or null if there is no such well.

I

ImmutableMathUtil - Class in com.github.jessemull.microflexinteger.util

Implementation of big integer and big decimal methods missing from the java math library but required for the MicroFlex math and statistics packages.

ImmutableMathUtil() - Constructor for class com.github.jessemull.microflexinteger.util.ImmutableMathUtil

Increment - Class in com.github.jessemull.microflexinteger.math

This class performs increment operations with a single argument for integer plate stacks, plates, wells and well sets.

Increment() - Constructor for class com.github.jessemull.microflexinteger.math.Increment

index() - Method in class com.github.jessemull.microflexinteger.plate.WellPrecursor

Returns the well index as a letter(s) number pair.

indexOf(Integer) - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the index of the first occurrence of the specified element in this list, or -1 if this list does not contain the element.

indices() - Method in class com.github.jessemull.microflexinteger.plate.WellList

Returns the list of indices.

INTEGER - Static variable in class com.github.jessemull.microflexinteger.plate.WellPrecursor

INTEGER - Variable in class com.github.jessemull.microflexinteger.util.RandomUtil

IntegerUtil - Class in com.github.jessemull.microflexinteger.util

This class safely converts (1) integer values to lists or arrays of another numeric type (2) a value from another numeric type to an integer.

IntegerUtil() - Constructor for class com.github.jessemull.microflexinteger.util.IntegerUtil

InterquartileRange - Class in com.github.jessemull.microflexinteger.stat

This class calculates the inter-quartile range of integer plate stacks, plates, wells and well sets.

InterquartileRange() - Constructor for class com.github.jessemull.microflexinteger.stat.InterquartileRange

intOverflow(Double) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a double to an integer.

intOverflow(Float) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a float to an integer.

intOverflow(Long) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a long to an integer.

intOverflow(BigDecimal) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a BigDecimal to an integer.

intOverflow(BigInteger) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a BigInteger to an integer.

isEmpty() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns true if the plate is empty.

isEmpty() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns true if the plate is empty.

isEmpty() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns true if the well data set is empty and false otherwise.

isEmpty() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns true if this set contains no wells.

iterator() - Method in class com.github.jessemull.microflexinteger.io.PlateListPOJO

Returns an iterator for the list of plates.

iterator() - Method in class com.github.jessemull.microflexinteger.io.PlateListXML

Returns an iterator for the list of plates.

iterator() - Method in class com.github.jessemull.microflexinteger.io.ResultListPOJO

Returns an iterator for the list of results.

iterator() - Method in class com.github.jessemull.microflexinteger.io.ResultListXML

Returns an iterator for result list.

iterator() - Method in class com.github.jessemull.microflexinteger.io.StackListPOJO

Returns an iterator for the list of stacks.

iterator() - Method in class com.github.jessemull.microflexinteger.io.StackListXML

Returns an iterator for the list of stacks.

iterator() - Method in class com.github.jessemull.microflexinteger.io.WellListPOJO

Returns an iterator for the list of wells.

iterator() - Method in class com.github.jessemull.microflexinteger.io.WellListXML

Returns an iterator for the list of XML wells.

iterator() - Method in class com.github.jessemull.microflexinteger.io.WellSetListPOJO

Returns an iterator for the list of well sets.

iterator() - Method in class com.github.jessemull.microflexinteger.io.WellSetListXML

Returns an iterator for the list of well sets.

iterator() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns an iterator that iterates over the well in the plate.

iterator() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns an iterator that iterates over the plates in the stack.

iterator() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns an iterator for the well data set.

iterator() - Method in class com.github.jessemull.microflexinteger.plate.WellList

Returns a well index iterator.

iterator() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns an iterator over the wells in this set in ascending order.

K

Kurtosis - Class in com.github.jessemull.microflexinteger.stat

This class calculates the kurtosis of integer plate stacks, plates, wells and well sets using the following unbiased formula:

[n * (n + 1) / (n - 1) * (n - 2) * (n - 3)] * SUMOF(Fourth Moment / (Standard Deviation)^2) where n is the number of values

Statistical operations can be performed on stacks, plates, sets and wells using standard or aggregated functions.

Kurtosis() - Constructor for class com.github.jessemull.microflexinteger.stat.Kurtosis

L

label() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the plate label or the hash code if the label is undefined.

label() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the label for the plate stack.

label() - Method in class com.github.jessemull.microflexinteger.plate.WellList

Returns the list name.

label() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns the label.

last() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the last well in the set.

last() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the last plate in the set.

last() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns the last well in the set.

lastIndexOf(Integer) - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the index of the last occurrence of the specified element in this list, or -1 if this list does not contain the element.

LeftShift - Class in com.github.jessemull.microflexinteger.math

This class performs a left shift operations for integer plate stacks, plates, wells and well sets.

LeftShift() - Constructor for class com.github.jessemull.microflexinteger.math.LeftShift

ln(BigDecimal) - Static method in class com.github.jessemull.microflexinteger.util.ImmutableMathUtil

Calculates the natural logarithm using a Taylor sequqnce.

ln(BigDecimal, MathContext) - Static method in class com.github.jessemull.microflexinteger.util.ImmutableMathUtil

Calculates the natural logarithm using a Taylor sequqnce.

longOverflow(Double) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a double to an long.

longOverflow(Float) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a float to an long.

longOverflow(BigDecimal) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a BigDecimal to an long.

longOverflow(BigInteger) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a BigInteger to an long.

lower(Well) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the greatest well in this set strictly less than the given well, or null if there is no such well.

lower(Plate) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the greatest plate in this set strictly less than the given plate, or null if there is no such plate.

lower(Well) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns the greatest well in this set strictly less than the given well, or null if there is no such well.

M

MathOperationBinary - Class in com.github.jessemull.microflexinteger.math

This class performs mathematical operations with two arguments for integer plate stacks, plates, wells and well sets.

MathOperationBinary() - Constructor for class com.github.jessemull.microflexinteger.math.MathOperationBinary

Creates a new math operation.

MathOperationIntegerUnary - Class in com.github.jessemull.microflexinteger.math

This class performs mathematical operations with a single argument for integer plate stacks, plates, wells and well sets.

MathOperationIntegerUnary() - Constructor for class com.github.jessemull.microflexinteger.math.MathOperationIntegerUnary

Creates a new math operation.

MathOperationShift - Class in com.github.jessemull.microflexinteger.math

This class performs mathematical shift operations for integer plate stacks, plates, wells and well sets.

MathOperationShift() - Constructor for class com.github.jessemull.microflexinteger.math.MathOperationShift

Creates a new math operation.

Max - Class in com.github.jessemull.microflexinteger.stat

This class returns the maximum value in a data set for integer plate stacks, plates, wells and well sets.

Max() - Constructor for class com.github.jessemull.microflexinteger.stat.Max

Mean - Class in com.github.jessemull.microflexinteger.stat

This class calculates the mean of integer plate stacks, plates, wells and well sets.

Mean() - Constructor for class com.github.jessemull.microflexinteger.stat.Mean

mean(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.PopulationVariance

Calculates the mean.

mean(List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.SampleVariance

Calculates the mean.

MeanDeviation - Class in com.github.jessemull.microflexinteger.stat

This class returns the maximum value in a data set for integer plate stacks, plates, wells and well sets.

MeanDeviation() - Constructor for class com.github.jessemull.microflexinteger.stat.MeanDeviation

Median - Class in com.github.jessemull.microflexinteger.stat

This class calculates the median of integer plate stacks, plates, wells and well sets.

Median() - Constructor for class com.github.jessemull.microflexinteger.stat.Median

MedianDeviation - Class in com.github.jessemull.microflexinteger.stat

This class calculates the median deviation of integer plate stacks, plates, wells and well sets.

MedianDeviation() - Constructor for class com.github.jessemull.microflexinteger.stat.MedianDeviation

Min - Class in com.github.jessemull.microflexinteger.stat

This class returns the minimum value in a data set for integer plate stacks, plates, wells and well sets.

Min() - Constructor for class com.github.jessemull.microflexinteger.stat.Min

Mode - Class in com.github.jessemull.microflexinteger.stat

This class returns the mode in a data set for integer plate stacks, plates, wells and well sets.

Mode() - Constructor for class com.github.jessemull.microflexinteger.stat.Mode

Modulus - Class in com.github.jessemull.microflexinteger.math

This class performs modulus operations with two arguments for integer plate stacks, plates, wells and well sets.

Modulus() - Constructor for class com.github.jessemull.microflexinteger.math.Modulus

Multiplication - Class in com.github.jessemull.microflexinteger.math

This class performs multiplication operations with two arguments for integer plate stacks, plates, wells and well sets.

Multiplication() - Constructor for class com.github.jessemull.microflexinteger.math.Multiplication

N

N - Class in com.github.jessemull.microflexinteger.stat

This class returns the number of data points in integer plate stacks, plates, wells and well sets.

N() - Constructor for class com.github.jessemull.microflexinteger.stat.N

nextJSONPlate() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the next plate in the plate list to a plate object and returns the result.

nextJSONResult() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the next result in the result list to a well set object and returns the result.

nextJSONSet() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the next set in the set list to a well set object and returns the result.

nextJSONStack() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the next stack in the stack list to a stack object and returns the result.

nextJSONWell() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the next well in the well list to a well object and returns the result.

nextMap() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Scans the next token of the input as a plate map.

nextTable() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Scans the next token of the input as a table of wells.

nextXMLPlate() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the next plate in the plate list to a plate object and returns the result.

nextXMLResult() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the next result in the result list to a well set object and returns the result.

nextXMLSet() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the next well set in the well set list to a well set object and returns the result.

nextXMLStack() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the next stack in the stack list to a stack object and returns the result.

nextXMLWell() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the next well in the well list to a well object and returns the result.

O

OR - Class in com.github.jessemull.microflexinteger.math

This class performs logical OR operations with two arguments for integer plate stacks, plates, wells and well sets.

OR() - Constructor for class com.github.jessemull.microflexinteger.math.OR

overflowError(Number) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Throws an arithmetic exception when overflow occurs.

OverFlowUtil - Class in com.github.jessemull.microflexinteger.util

This class checks for overflow when casting a number to another type.

OverFlowUtil() - Constructor for class com.github.jessemull.microflexinteger.util.OverFlowUtil

P

Percentile - Class in com.github.jessemull.microflexinteger.stat

This class calculates percentiles for integer plate stacks, plates, wells and well sets using the following steps:

1. Calculate R as P/100 x (N + 1) where N is the number of values and P is the desired percentile
2. Define IR as the integer portion of R
3. Define FR as the fractional portion of R
4. Find the scores with Rank IR and with Rank IR + 1
5. Interpolate using the formula (Score IR+1 - Score IR) * FR + Score IR and return the result
   Statistical operations can be performed on stacks, plates, sets and wells using standard or aggregated functions.

Percentile() - Constructor for class com.github.jessemull.microflexinteger.stat.Percentile

Plate - Class in com.github.jessemull.microflexinteger.plate

This class represents a microplate used by chemists, biologists, physicists and many other natural science researchers.

Plate(int) - Constructor for class com.github.jessemull.microflexinteger.plate.Plate

Creates a Integer plate.

Plate(int, int) - Constructor for class com.github.jessemull.microflexinteger.plate.Plate

Creates a Integer plate.

Plate(int, String) - Constructor for class com.github.jessemull.microflexinteger.plate.Plate

Creates a Integer plate.

Plate(int, int, String) - Constructor for class com.github.jessemull.microflexinteger.plate.Plate

Creates a Integer plate.

Plate(int, WellSet) - Constructor for class com.github.jessemull.microflexinteger.plate.Plate

Creates a Integer plate.

Plate(int, int, WellSet) - Constructor for class com.github.jessemull.microflexinteger.plate.Plate

Creates a Integer plate.

Plate(int, String, WellSet) - Constructor for class com.github.jessemull.microflexinteger.plate.Plate

Creates a Integer plate.

Plate(int, int, String, WellSet) - Constructor for class com.github.jessemull.microflexinteger.plate.Plate

Creates a Integer plate.

Plate(Plate) - Constructor for class com.github.jessemull.microflexinteger.plate.Plate

Clones a Integer plate.

plate(Plate) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the statistic for each plate well.

plate(Plate, int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the statistic for each plate well using the values between the beginning and ending indices.

plate(Plate) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the statistic for each plate well.

plate(Plate, int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the statistic for each plate well using the values between the beginning and ending indices.

plate(Plate, double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the weighted statistic for each plate well.

plate(Plate, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the weighted statistic for each plate well using the values between the beginning and ending indices.

plate(Plate, double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the weighted statistic for each plate well.

plate(Plate, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the weighted statistic for each plate well using the values between the beginning and ending indices.

plate(Plate) - Method in class com.github.jessemull.microflexinteger.stat.N

Returns the number of data points for each plate well.

plate(Plate, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the percentile for each plate well.

plate(Plate, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the percentile for each plate well using the values between the beginning and ending indices.

plate(Plate, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the statistic for each plate well.

plate(Plate, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the statistic for each plate well using the values between the beginning and ending indices.

plate(Plate, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the statistic for each plate well.

plate(Plate, int, int, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the statistic for each plate well using the values between the beginning and ending indices.

plate(Plate, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the statistic for each plate well.

plate(Plate, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the statistic for each plate well using the values between the beginning and ending indices.

plate(Plate, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the statistic for each plate well.

plate(Plate, int, int, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the statistic for each plate well using the values between the beginning and ending indices.

PLATE_12WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

PLATE_12WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

PLATE_1536WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

PLATE_1536WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

PLATE_24WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

PLATE_24WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

PLATE_384WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

PLATE_384WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

PLATE_48WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

PLATE_48WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

PLATE_6WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

PLATE_6WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

PLATE_96WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

PLATE_96WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

PLATE_BIGDECIMAL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

PLATE_BIGDECIMAL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

PLATE_BIGINTEGER - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

PLATE_BIGINTEGER - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

PLATE_DOUBLE - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

PLATE_DOUBLE - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

PLATE_INTEGER - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

PLATE_INTEGER - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

PlateListPOJO - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class for importing or exporting a list of JSON encoded plate objects.

PlateListPOJO() - Constructor for class com.github.jessemull.microflexinteger.io.PlateListPOJO

PlateListPOJO(Plate) - Constructor for class com.github.jessemull.microflexinteger.io.PlateListPOJO

Creates a plate list POJO from a plate object.

PlateListPOJO(Collection<Plate>) - Constructor for class com.github.jessemull.microflexinteger.io.PlateListPOJO

Creates a plate list POJO from a collection of plate objects.

PlateListPOJO(Plate[]) - Constructor for class com.github.jessemull.microflexinteger.io.PlateListPOJO

Creates a plate list POJO from an array of plate objects.

PlateListXML - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class used to marshal/unmarshal a list of XML encoded plate objects.

PlateListXML() - Constructor for class com.github.jessemull.microflexinteger.io.PlateListXML

PlateListXML(Plate) - Constructor for class com.github.jessemull.microflexinteger.io.PlateListXML

Creates an xml plate list from a plate object.

PlateListXML(Collection<Plate>) - Constructor for class com.github.jessemull.microflexinteger.io.PlateListXML

Creates an xml plate list from a collection of plate objects.

PlateListXML(Plate[]) - Constructor for class com.github.jessemull.microflexinteger.io.PlateListXML

Creates an xml plate list from an array of plate objects.

PlatePOJO - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class for importing or exporting a JSON encoded plate object.

PlatePOJO() - Constructor for class com.github.jessemull.microflexinteger.io.PlatePOJO

PlatePOJO(Plate) - Constructor for class com.github.jessemull.microflexinteger.io.PlatePOJO

Creates a plate POJO from a plate object.

PlateReader - Class in com.github.jessemull.microflexinteger.io

Parses an input stream containing integer stacks, plates, well sets, and/or wells.

PlateReader(Reader) - Constructor for class com.github.jessemull.microflexinteger.io.PlateReader

Constructs a new reader for a buffering character input stream using the default buffer size.

PlateReader(Reader, int) - Constructor for class com.github.jessemull.microflexinteger.io.PlateReader

Constructs a new reader for a buffering character input stream using an input buffer of the specified size.

PlateReader(InputStream) - Constructor for class com.github.jessemull.microflexinteger.io.PlateReader

Constructs a new reader for a buffering character input stream using the default buffer size.

PlateReader(InputStream, int) - Constructor for class com.github.jessemull.microflexinteger.io.PlateReader

Constructs a new reader for a buffering character input stream using an input buffer of the specified size.

PlateReader(InputStream, Charset) - Constructor for class com.github.jessemull.microflexinteger.io.PlateReader

Constructs a new reader for a buffering character input stream using the default buffer size.

PlateReader(InputStream, String, int) - Constructor for class com.github.jessemull.microflexinteger.io.PlateReader

Constructs a new reader for a buffering character input stream using an input buffer of the specified size.

PlateReader(InputStream, CharsetDecoder) - Constructor for class com.github.jessemull.microflexinteger.io.PlateReader

Constructs a new reader for a buffering character input stream using the default buffer size.

PlateReader(InputStream, CharsetDecoder, int) - Constructor for class com.github.jessemull.microflexinteger.io.PlateReader

Constructs a new reader for a buffering character input stream using an input buffer of the specified size.

PlateReader(File) - Constructor for class com.github.jessemull.microflexinteger.io.PlateReader

Constructs a new reader for a buffering character input stream using the default buffer size.

PlateReader(File, int) - Constructor for class com.github.jessemull.microflexinteger.io.PlateReader

Constructs a new reader for a buffering character input stream using an input buffer of the specified size.

PlateReader(String) - Constructor for class com.github.jessemull.microflexinteger.io.PlateReader

Constructs a new reader for a buffering character input stream using the default buffer size.

PlateReader(String, int) - Constructor for class com.github.jessemull.microflexinteger.io.PlateReader

Constructs a new reader for a buffering character input stream using the specified file source and charset name.

plates(Plate, Plate) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

plates(Plate, Plate, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation using the values between the indices.

plates(Plate, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

plates(Plate, int[]) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

plates(Plate, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

plates(Plate, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

plates(Plate, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

plates(Plate) - Method in class com.github.jessemull.microflexinteger.math.MathOperationIntegerUnary

Returns the result of the mathematical operation.

plates(Plate, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationIntegerUnary

Returns the result of the mathematical operation using the values between the indices.

plates(Plate, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationShift

Returns the result of the mathematical operation.

plates(Plate, int, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationShift

Returns the result of the mathematical operation using the values between the indices.

platesAggregated(Plate) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the aggregated statistic for the plate.

platesAggregated(Collection<Plate>) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the aggregated statistic for each plate.

platesAggregated(Plate[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the aggregated statistic for each plate.

platesAggregated(Plate, int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Collection<Plate>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Plate[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Plate) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the aggregated statistic for the plate.

platesAggregated(Collection<Plate>) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the aggregated statistic for each plate.

platesAggregated(Plate[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the aggregated statistic for each plate.

platesAggregated(Plate, int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Collection<Plate>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Plate[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Plate, double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the aggregated weighted statistic for the plate.

platesAggregated(Collection<Plate>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the aggregated weighted statistic for each plate.

platesAggregated(Plate[], double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the aggregated weighted statistic for each plate.

platesAggregated(Plate, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the aggregated weighted statistic for the plate using the values between the indices.

platesAggregated(Collection<Plate>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the aggregated weighted statistic for each plate using the values between the indices.

platesAggregated(Plate[], double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the aggregated weighted statistic for each plate using the values between the indices.

platesAggregated(Plate, double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the aggregated weighted statistic for the plate.

platesAggregated(Collection<Plate>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the aggregated weighted statistic for each plate.

platesAggregated(Plate[], double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the aggregated weighted statistic for each plate.

platesAggregated(Plate, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the aggregated weighted statistic for the plate using the values between the indices.

platesAggregated(Collection<Plate>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the aggregated weighted statistic for each plate using the values between the indices.

platesAggregated(Plate[], double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the aggregated weighted statistic for each plate using the values between the indices.

platesAggregated(Plate) - Method in class com.github.jessemull.microflexinteger.stat.N

Returns the aggregated number of data points for the plate.

platesAggregated(Collection<Plate>) - Method in class com.github.jessemull.microflexinteger.stat.N

Returns the aggregated number of data points for each plate.

platesAggregated(Plate[]) - Method in class com.github.jessemull.microflexinteger.stat.N

Returns the aggregated number of data points for each plate.

platesAggregated(Plate, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the aggregated percentile for the plate.

platesAggregated(Collection<Plate>, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the aggregated percentile for each plate.

platesAggregated(Plate[], int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the aggregated percentile for each plate.

platesAggregated(Plate, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the aggregated percentile for each plate using the values between the indices.

platesAggregated(Collection<Plate>, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the aggregated percentile for each plate using the values between the indices.

platesAggregated(Plate[], int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the aggregated percentile for each plate using the values between the indices.

platesAggregated(Plate, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the aggregated statistic for the plate.

platesAggregated(Collection<Plate>, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the aggregated statistic for each plate.

platesAggregated(Plate[], int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the aggregated statistic for each plate.

platesAggregated(Plate, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Collection<Plate>, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Plate[], int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Plate, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the aggregated statistic for the plate.

platesAggregated(Collection<Plate>, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the aggregated statistic for each plate.

platesAggregated(Plate[], double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the aggregated statistic for each plate.

platesAggregated(Plate, int, int, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Collection<Plate>, int, int, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Plate[], int, int, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Plate, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the aggregated statistic for the plate.

platesAggregated(Collection<Plate>, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the aggregated statistic for each plate.

platesAggregated(Plate[], int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the aggregated statistic for each plate.

platesAggregated(Plate, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Collection<Plate>, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Plate[], int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Plate, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the aggregated statistic for the plate.

platesAggregated(Collection<Plate>, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the aggregated statistic for each plate.

platesAggregated(Plate[], List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the aggregated statistic for each plate.

platesAggregated(Plate, int, int, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Collection<Plate>, int, int, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the aggregated statistic for each plate using the values between the indices.

platesAggregated(Plate[], int, int, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the aggregated statistic for each plate using the values between the indices.

platesStrict(Plate, Plate) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

platesStrict(Plate, Plate, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation using the values between the indices.

platesStrict(Plate, int[]) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

platesStrict(Plate, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

platesStrict(Plate, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

platesStrict(Plate, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

plateToJSON(Plate) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the plate values in a JSON format.

plateToJSON(Collection<Plate>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the collection of plates in a JSON format.

plateToJSON(Plate[]) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the array of plates in a JSON format.

plateToJSONAsString(Plate) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the plate values in a JSON format.

plateToJSONAsString(Collection<Plate>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the collection of plates in a JSON format.

plateToJSONAsString(Plate[]) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the array of plates in a JSON format.

plateToXML(Plate) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the plate values in an XML format.

plateToXML(Collection<Plate>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the collection of plates in an XML format.

plateToXML(Plate[]) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the array of plates in an XML format.

plateToXMLAsString(Plate) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the plate values in an XML format.

plateToXMLAsString(Collection<Plate>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the collection of plates in an XML format.

plateToXMLAsString(Plate[]) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the array of plates in an XML format.

PlateWriter - Class in com.github.jessemull.microflexinteger.io

Formats and writes stacks, plates, well sets and wells to an output stream or string.

PlateWriter(File) - Constructor for class com.github.jessemull.microflexinteger.io.PlateWriter

Creates a new PlateWriterInteger without automatic line flushing using the specified file.

PlateWriter(File, String) - Constructor for class com.github.jessemull.microflexinteger.io.PlateWriter

Creates a new PlateWriterInteger without automatic line flushing using the specified file and character set.

PlateWriter(OutputStream) - Constructor for class com.github.jessemull.microflexinteger.io.PlateWriter

Creates a new PlateWriterInteger, without automatic line flushing using the OutputStream.

PlateWriter(OutputStream, boolean) - Constructor for class com.github.jessemull.microflexinteger.io.PlateWriter

Creates a new PlateWriterInteger with automatic line flushing, using the OutputStream.

PlateWriter(String) - Constructor for class com.github.jessemull.microflexinteger.io.PlateWriter

Creates a new PlateWriterInteger without automatic line flushing using the specified file name.

PlateWriter(String, String) - Constructor for class com.github.jessemull.microflexinteger.io.PlateWriter

Creates a new PlateWriterInteger without automatic line flushing using the specified file name and character set.

PlateWriter(Writer) - Constructor for class com.github.jessemull.microflexinteger.io.PlateWriter

Creates a new PlateWriterInteger without automatic line flushing using the writer.

PlateWriter(Writer, boolean) - Constructor for class com.github.jessemull.microflexinteger.io.PlateWriter

Creates a new PlateWriterInteger with automatic line flushing using the writer.

PlateXML - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class used to marshal/unmarshal an XML encoded plate object.

PlateXML() - Constructor for class com.github.jessemull.microflexinteger.io.PlateXML

PlateXML(Plate) - Constructor for class com.github.jessemull.microflexinteger.io.PlateXML

Creates an XML plate from a plate object.

pollFirst() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Retrieves and removes the first (lowest) well, or returns null if this set is empty.

pollFirst() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Retrieves and removes the first (lowest) plate, or returns null if this set is empty.

pollFirst() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Retrieves and removes the first (lowest) well, or returns null if this set is empty.

pollLast() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Retrieves and removes the last (highest) well, or returns null if this set is empty.

pollLast() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Retrieves and removes the last (highest) plate, or returns null if this set is empty.

pollLast() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Retrieves and removes the last (highest) well, or returns null if this set is empty.

PopulationStandardDeviation - Class in com.github.jessemull.microflexinteger.stat

This class calculates the population standard deviation of integer plate stacks, plates, wells and well sets as the square root of the unbiased sample variance.

PopulationStandardDeviation() - Constructor for class com.github.jessemull.microflexinteger.stat.PopulationStandardDeviation

PopulationVariance - Class in com.github.jessemull.microflexinteger.stat

This class calculates the population variance of integer plate stacks, plates, wells and well sets as the sum of the second moment divided by the number of values.

PopulationVariance() - Constructor for class com.github.jessemull.microflexinteger.stat.PopulationVariance

pow(BigDecimal, BigDecimal) - Static method in class com.github.jessemull.microflexinteger.util.ImmutableMathUtil

Raises the base to the power and returns the result.

pow(BigDecimal, BigDecimal, MathContext) - Static method in class com.github.jessemull.microflexinteger.util.ImmutableMathUtil

Raises the base to the power and returns the result.

PowerDeviation - Class in com.github.jessemull.microflexinteger.stat

This class calculates the pth power deviation for integer plate stacks, plates, wells and well sets.

PowerDeviation() - Constructor for class com.github.jessemull.microflexinteger.stat.PowerDeviation

previousJSONPlate() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the previous plate in the plate list to a plate object and returns the result.

previousJSONResult() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the previous result in the result list to a well set object and returns the result.

previousJSONSet() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the previous set in the set list to a well set object and returns the result.

previousJSONStack() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the previous stack in the stack list to a stack object and returns the result.

previousJSONWell() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the previous well in the well list to a well object and returns the result.

previousXMLPlate() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the previous plate in the plate list to a plate object and returns the result.

previousXMLResult() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the previous result in the result list to a well set object and returns the result.

previousXMLSet() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the previous well set in the well set list to a well set object and returns the result.

previousXMLStack() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the previous stack in the stack list to a stack object and returns the result.

previousXMLWell() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Parses the previous well in the well list to a well object and returns the result.

printAllData() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns a string holding the well ID and data for all the plate wells.

printData(Well) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns a string holding the well data.

printMapResult(Map<Well, Integer>, int, int, String) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the plate map.

printMapResultAsString(Map<Well, Integer>, int, int, String) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the plate map.

printTableResult(Map<Well, Integer>, String) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well value pairs as a delimiter separated table.

printTableResultAsString(Map<Well, Integer>, String) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Resturns a string holding the well value pairs as a delimiter separated table.

printXMLStack(StackListXML) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the stack as an XML object.

printXMLStackAsString(StackListXML) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the stack list as an XML object.

Product - Class in com.github.jessemull.microflexinteger.stat

This class calculates the product of integer plate stacks, plates, wells and well sets.

Product() - Constructor for class com.github.jessemull.microflexinteger.stat.Product

Q

Quantile - Class in com.github.jessemull.microflexinteger.stat

This class calculates quantiles for integer plate stacks, plates, wells and well sets using the following steps:

1. Calculate R as Q x (N + 1) where N is the number of values and Q is the desired quantile
2. Define IR as the integer portion of R
3. Define FR as the fractional portion of R
4. Find the scores with Rank IR and with Rank IR + 1
5. Interpolate using the formula (Score IR+1 - Score IR) * FR + Score IR and return the result
   Statistical operations can be performed on stacks, plates, sets and wells using standard or aggregated functions.

Quantile() - Constructor for class com.github.jessemull.microflexinteger.stat.Quantile

QuantileStatistic - Class in com.github.jessemull.microflexinteger.stat

This class calculates descriptive statistics with list and integer inputs to the calculate functions.

QuantileStatistic() - Constructor for class com.github.jessemull.microflexinteger.stat.QuantileStatistic

QuantileStatisticIntegers - Class in com.github.jessemull.microflexinteger.stat

This class calculates descriptive statistics with list and double inputs to the calculate functions.

QuantileStatisticIntegers() - Constructor for class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

QuantileStatisticList - Class in com.github.jessemull.microflexinteger.stat

This class calculates descriptive statistics with calculate functions that take list and integer inputs and return a list of lists.

QuantileStatisticList() - Constructor for class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

QuantileStatisticListsIntegers - Class in com.github.jessemull.microflexinteger.stat

This class calculates descriptive statistics with calculate functions that take two lists as input and return a list of lists.

QuantileStatisticListsIntegers() - Constructor for class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

QuartileDeviation - Class in com.github.jessemull.microflexinteger.stat

This class calculates the quartile deviation of integer plate stacks, plates, wells and well sets.

QuartileDeviation() - Constructor for class com.github.jessemull.microflexinteger.stat.QuartileDeviation

Quartiles - Class in com.github.jessemull.microflexinteger.stat

This class returns the quartiles for integer plate stacks, plates, wells and well sets.

Quartiles() - Constructor for class com.github.jessemull.microflexinteger.stat.Quartiles

QuartileSkewness - Class in com.github.jessemull.microflexinteger.stat

This class calculates the quartile skewness of integer plate stacks, plates, wells and well sets.

QuartileSkewness() - Constructor for class com.github.jessemull.microflexinteger.stat.QuartileSkewness

R

randomDoubleList(double, double, int, int) - Static method in class com.github.jessemull.microflexinteger.util.RandomUtil

Returns a list of randomly generated doubles using the minimum and maximum data point values and the minimum and maximum lengths.

randomDoubleList(double, double, int) - Static method in class com.github.jessemull.microflexinteger.util.RandomUtil

Returns a list of randomly generated doubles using the minimum and maximum data point values and length.

randomIndex(Collection<?>) - Static method in class com.github.jessemull.microflexinteger.util.RandomUtil

Returns a random index for the collection.

randomIndex(Object[]) - Static method in class com.github.jessemull.microflexinteger.util.RandomUtil

Returns a random index for the array.

randomIntegerList(int, int, int, int) - Static method in class com.github.jessemull.microflexinteger.util.RandomUtil

Returns a list of randomly generated integers using the minimum and maximum data point values and the minimum and maximum lengths.

randomIntegerList(int, int, int) - Static method in class com.github.jessemull.microflexinteger.util.RandomUtil

Returns a list of randomly generated integers using the minimum and maximum data point values and length.

randomObject(Collection<?>) - Static method in class com.github.jessemull.microflexinteger.util.RandomUtil

Returns a random object from a collection of objects.

randomObject(Object[]) - Static method in class com.github.jessemull.microflexinteger.util.RandomUtil

Returns a random object from a collection of objects.

randomPlateInteger(int, int, int, int, int, int, int, int, String) - Static method in class com.github.jessemull.microflexinteger.util.RandomUtil

Generates random integer data sets for each well in the plate using the minimum and maximum data point values and the minimum and maximum length values.

randomPlateInteger(int, int, int, int, int, String) - Static method in class com.github.jessemull.microflexinteger.util.RandomUtil

Generates random integer data sets for each well in the plate using the minimum and maximum data point values and the minimum and maximum length values.

RandomSample - Class in com.github.jessemull.microflexinteger.stat

This class returns a random subset of the data values for integer plate stacks, plates, wells and well sets.

RandomSample() - Constructor for class com.github.jessemull.microflexinteger.stat.RandomSample

randomStackInteger(int, int, int, int, int, int, int, int, String, int) - Static method in class com.github.jessemull.microflexinteger.util.RandomUtil

Generates a random integer stack with the specified number of plates.

randomStackInteger(int, int, int, int, int, String, int) - Static method in class com.github.jessemull.microflexinteger.util.RandomUtil

Generates a random integer stack with the specified number of plates.

RandomUtil - Class in com.github.jessemull.microflexinteger.util

This class provides static utility helper methods for generating random data sets, wells, sets, plates and stacks.

RandomUtil() - Constructor for class com.github.jessemull.microflexinteger.util.RandomUtil

randomWellInteger(int, int, int, int, int, int, int, int) - Static method in class com.github.jessemull.microflexinteger.util.RandomUtil

Returns a random well index between the indices.

randomWellInteger(int, int, int, int, int, int, int) - Static method in class com.github.jessemull.microflexinteger.util.RandomUtil

Returns a random well between the indices.

randomWellSetInteger(int, int, int, int, int, int, int, int) - Static method in class com.github.jessemull.microflexinteger.util.RandomUtil

Returns a random well set with wells between the indices.

randomWellSetInteger(int, int, int, int, int, int, int) - Static method in class com.github.jessemull.microflexinteger.util.RandomUtil

Returns a random well set with wells between the indices.

Range - Class in com.github.jessemull.microflexinteger.stat

This class returns the range for integer plate stacks, plates, wells and well sets.

Range() - Constructor for class com.github.jessemull.microflexinteger.stat.Range

remainingJSONPlates() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the plate objects with an index greater than the current index.

remainingJSONResults() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the result objects with an index greater than the current index.

remainingJSONSets() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the set objects with an index greater than the current index.

remainingJSONStacks() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the stack objects with an index greater than the current index.

remainingJSONWells() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the well objects with an index greater than the current index.

remainingXMLPlates() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the plate objects with an index greater than the current index.

remainingXMLResults() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the result objects with an index greater than the current index.

remainingXMLSets() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the well set objects with an index greater than the current index.

remainingXMLStacks() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the stack objects with an index greater than the current index.

remainingXMLWells() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the well objects with an index greater than the current index.

remove(Plate) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Removes a plate from the plate stack.

remove(Collection<Plate>) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Removes a collection of plates from the plate stack.

remove(Plate[]) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Removes an array of plates from the plate stack.

remove(String) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Removes the plate with the input label.

remove(List<String>) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Removes all plates with a label found in the input list.

remove(Integer) - Method in class com.github.jessemull.microflexinteger.plate.Well

Removes the value from the data set.

remove(Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.plate.Well

Removes all the values in the collection from the data set.

remove(Integer[]) - Method in class com.github.jessemull.microflexinteger.plate.Well

Removes all the values in the array from the data set.

remove(WellIndex) - Method in class com.github.jessemull.microflexinteger.plate.WellList

Removes a well index.

remove(Well) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Removes a well from the well set.

remove(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Removes the wells in the input well set.

remove(Collection<Well>) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Removes a collection of wells from the well set.

remove(Well[]) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Removes an array of wells from the well set.

remove(String, String) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Removes a well or a list of delimiter separated wells.

remove(String) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Removes the well with the well index.

remove(WellIndex) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Removes the well with the well index.

remove(WellList) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Removes the wells in the list.

removeGroups(WellList) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Removes a well group.

removeGroups(Collection<WellList>) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Removes a collection of well groups.

removeGroups(WellList[]) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Removes an array of well groups.

removeGroups(String) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Removes an the group with the label.

removeGroups(List<String>) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Removes all wells with labels contained in the input list.

removeRange(int, int) - Method in class com.github.jessemull.microflexinteger.plate.Well

Removes all values within the indices.

removeSet(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.Well

Removes the well values for each well from the data set.

removeWell(Well) - Method in class com.github.jessemull.microflexinteger.plate.Well

Removes all the well values from the data set.

removeWells(Well) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Removes the well from the data set.

removeWells(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Removes a set of wells.

removeWells(Collection<Well>) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Removes a collection of wells.

removeWells(Well[]) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Removes an array of wells.

removeWells(String, String) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Removes the wells in the delimiter separated list.

removeWells(String) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Removes the well from the data set.

removeWells(WellIndex) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Removes the well from the data set.

removeWells(WellList) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Removes a well list.

replace(Plate) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Replaces a plate from the plate stack.

replace(Collection<Plate>) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Replaces a collection of plates from the plate stack.

replace(Plate[]) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Replaces an array of plates from the plate stack.

replace(Well) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Replaces the set well with the input well.

replace(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Replaces the set wells with the wells from the input set.

replace(Collection<Well>) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Replaces the set wells with the wells from the collection.

replace(Well[]) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Replaces the set wells with the wells from the array.

replaceData(Integer) - Method in class com.github.jessemull.microflexinteger.plate.Well

Clears the data set and adds the number.

replaceData(Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.plate.Well

Clears the data set and adds the collection.

replaceData(Integer[]) - Method in class com.github.jessemull.microflexinteger.plate.Well

Clears the data set and adds the array.

replaceData(Well) - Method in class com.github.jessemull.microflexinteger.plate.Well

Clears the data set and adds the well data set.

replaceData(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.Well

Clears the data set and adds the data from each well in the set.

replaceWells(Well) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Replaces the plate well with the input well.

replaceWells(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Replaces the plate wells with the wells from the well set.

replaceWells(Collection<Well>) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Replaces the plate wells with the wells from the collection.

replaceWells(Well[]) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Replaces the plate wells with the wells from the array.

ResultListPOJO - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class for importing or exporting a list of JSON encoded results.

ResultListPOJO() - Constructor for class com.github.jessemull.microflexinteger.io.ResultListPOJO

ResultListPOJO(Map<Well, Integer>) - Constructor for class com.github.jessemull.microflexinteger.io.ResultListPOJO

Creates a result list POJO from a well object.

ResultListPOJO(Map<Well, Integer>, String) - Constructor for class com.github.jessemull.microflexinteger.io.ResultListPOJO

Creates a result list POJO from a well object.

ResultListPOJO(Collection<Map<Well, Integer>>) - Constructor for class com.github.jessemull.microflexinteger.io.ResultListPOJO

Creates a result list POJO from a collection of well objects.

ResultListPOJO(Collection<Map<Well, Integer>>, List<String>) - Constructor for class com.github.jessemull.microflexinteger.io.ResultListPOJO

Creates a result list POJO from a collection of well objects.

ResultListXML - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class used to marshal/unmarshal a list of XML encoded results.

ResultListXML() - Constructor for class com.github.jessemull.microflexinteger.io.ResultListXML

ResultListXML(Map<Well, Integer>) - Constructor for class com.github.jessemull.microflexinteger.io.ResultListXML

Creates an XML result list from a map.

ResultListXML(Map<Well, Integer>, String) - Constructor for class com.github.jessemull.microflexinteger.io.ResultListXML

Creates an XML result list from a map and label.

ResultListXML(Collection<Map<Well, Integer>>) - Constructor for class com.github.jessemull.microflexinteger.io.ResultListXML

Creates an XML result list from a collection of maps.

ResultListXML(Collection<Map<Well, Integer>>, List<String>) - Constructor for class com.github.jessemull.microflexinteger.io.ResultListXML

Creates an XML result list from a collection of maps and a list of labels.

ResultPOJO - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class for importing or exporting a JSON encoded result.

ResultPOJO() - Constructor for class com.github.jessemull.microflexinteger.io.ResultPOJO

ResultPOJO(Map<Well, Integer>, String) - Constructor for class com.github.jessemull.microflexinteger.io.ResultPOJO

Creates a result POJO.

resultToJSON(Map<Well, Integer>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well value pairs in a JSON format.

resultToJSON(List<Map<Well, Integer>>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well value pairs in a JSON format for each data set.

resultToJSON(Map<Well, Integer>, String) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well value pairs in a JSON format using the label.

resultToJSON(List<Map<Well, Integer>>, List<String>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well value pairs in a JSON format for each data set using the specified labels.

resultToJSONAsString(Map<Well, Integer>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the well value pairs in a JSON format.

resultToJSONAsString(List<Map<Well, Integer>>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the well value pairs in a JSON format for each data set.

resultToJSONAsString(Map<Well, Integer>, String) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the well value pairs in a JSON format using the label.

resultToJSONAsString(List<Map<Well, Integer>>, List<String>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the well value pairs in a JSON format for each data set using the specified labels.

resultToPlateMap(Map<Well, Integer>, int) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the plate map.

resultToPlateMap(List<Map<Well, Integer>>, int) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the plate map for each data set in the list.

resultToPlateMap(Map<Well, Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the plate map.

resultToPlateMap(List<Map<Well, Integer>>, int, int) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the plate map for each data set in the list.

resultToPlateMap(Map<Well, Integer>, int, String) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the plate map.

resultToPlateMap(List<Map<Well, Integer>>, int, List<String>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the plate map for each data set in the list.

resultToPlateMap(Map<Well, Integer>, int, int, String) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the plate map.

resultToPlateMap(List<Map<Well, Integer>>, int, int, List<String>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the plate map for each data set in the list.

resultToPlateMapAsString(Map<Well, Integer>, int) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the plate map.

resultToPlateMapAsString(List<Map<Well, Integer>>, int) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string holding the plate map for each data set in the list.

resultToPlateMapAsString(Map<Well, Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string holding the plate map.

resultToPlateMapAsString(List<Map<Well, Integer>>, int, int) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string holding the plate map for each data set in the list.

resultToPlateMapAsString(Map<Well, Integer>, int, String) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string holding the plate map.

resultToPlateMapAsString(List<Map<Well, Integer>>, int, List<String>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the plate map for each data set in the list.

resultToPlateMapAsString(Map<Well, Integer>, int, int, String) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the plate map.

resultToPlateMapAsString(List<Map<Well, Integer>>, int, int, List<String>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the plate map for each data set in the list.

resultToTable(Map<Well, Integer>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well value pairs as a delimiter separated table.

resultToTable(List<Map<Well, Integer>>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints each set of well value pairs as a delimiter separated table.

resultToTable(Map<Well, Integer>, String) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well value pairs as a delimiter separated table.

resultToTable(List<Map<Well, Integer>>, List<String>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well value pairs as a delimiter separated table.

resultToTableAsString(Map<Well, Integer>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the well value pairs as a delimiter separated table.

resultToTableAsString(List<Map<Well, Integer>>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing each set of well value pairs as a delimiter separated table.

resultToTableAsString(Map<Well, Integer>, String) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the well value pairs as a delimiter separated table.

resultToTableAsString(List<Map<Well, Integer>>, List<String>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the well value pairs as a delimiter separated table.

resultToXML(Map<Well, Integer>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well result values in an XML format.

resultToXML(Map<Well, Integer>, String) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well result values in an XML format.

resultToXML(Collection<Map<Well, Integer>>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the collection of result values in an XML format.

resultToXML(Collection<Map<Well, Integer>>, List<String>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the collection of result values in an XML format.

resultToXMLAsString(Map<Well, Integer>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the result values in an XML format.

resultToXMLAsString(Map<Well, Integer>, String) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the result values in an XML format.

resultToXMLAsString(Collection<Map<Well, Integer>>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the collection of result values in an XML format.

resultToXMLAsString(Collection<Map<Well, Integer>>, List<String>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the collection of result values in an XML format.

ResultWellXML - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class used to marshal/unmarshal an XML encoded well in a result.

ResultWellXML() - Constructor for class com.github.jessemull.microflexinteger.io.ResultWellXML

ResultWellXML(String, Integer) - Constructor for class com.github.jessemull.microflexinteger.io.ResultWellXML

Creates a simple XML well from an index and value.

ResultXML - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class used to marshal/unmarshal an XML encoded result.

ResultXML() - Constructor for class com.github.jessemull.microflexinteger.io.ResultXML

ResultXML(Map<Well, Integer>, String) - Constructor for class com.github.jessemull.microflexinteger.io.ResultXML

Creates a result XML object from a map.

retain(Plate) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Retains a plate from the plate stack.

retain(Collection<Plate>) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Retains a collection of plates from the plate stack.

retain(Plate[]) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Retains an array of plates from the plate stack.

retain(String) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Retains the plate with the input label.

retain(List<String>) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Retains all plates with a label found in the input list.

retain(Integer) - Method in class com.github.jessemull.microflexinteger.plate.Well

Retains the values in the data set.

retain(Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.plate.Well

Retains all the values in the collection.

retain(Integer[]) - Method in class com.github.jessemull.microflexinteger.plate.Well

Retains all the values in the array.

retain(Well) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Retains the input well if it exists.

retain(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Retains the wells in the well set if they exist.

retain(Collection<Well>) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Retains the wells in the collection if they exist.

retain(Well[]) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Retains the wells in the array if they exist.

retain(String, String) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Retain the wells in the delimiter separated list.

retain(String) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Retains the well.

retain(WellIndex) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Retains the well with the well index.

retain(WellList) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Retains the wells in the list.

retainRange(int, int) - Method in class com.github.jessemull.microflexinteger.plate.Well

Retains all values within the indices.

retainSet(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.Well

Retains all the values in each well.

retainWell(Well) - Method in class com.github.jessemull.microflexinteger.plate.Well

Retains all the values in the well.

retainWells(Well) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Retains the input well if it exists.

retainWells(WellSet) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Retains the wells in the well set if they exist.

retainWells(Collection<Well>) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Retains the wells in the collection if they exist.

retainWells(Well[]) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Retains the wells in the array if they exist.

retainWells(String, String) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Retains the wells in the delimiter separated list.

retainWells(String) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Retains the well in the data set.

retainWells(WellIndex) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Retains the well with the index.

retainWells(WellList) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Retains the wells in the list.

RightShiftArithmetic - Class in com.github.jessemull.microflexinteger.math

This class performs a right unsigned/arithmetic shift operations for integer plate stacks, plates, wells and well sets.

RightShiftArithmetic() - Constructor for class com.github.jessemull.microflexinteger.math.RightShiftArithmetic

RightShiftLogical - Class in com.github.jessemull.microflexinteger.math

This class performs a right signed/logical shift operations for integer plate stacks, plates, wells and well sets.

RightShiftLogical() - Constructor for class com.github.jessemull.microflexinteger.math.RightShiftLogical

row() - Method in class com.github.jessemull.microflexinteger.plate.WellIndex

Returns the row index.

row() - Method in class com.github.jessemull.microflexinteger.plate.WellPrecursor

Returns the row number.

rows() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the number of rows.

rows() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the row number.

ROWS_12WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

ROWS_12WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

ROWS_1536WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

ROWS_1536WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

ROWS_24WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

ROWS_24WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

ROWS_384WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

ROWS_384WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

ROWS_48WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

ROWS_48WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

ROWS_6WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

ROWS_6WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

ROWS_96WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Plate

ROWS_96WELL - Static variable in class com.github.jessemull.microflexinteger.plate.Stack

rowString() - Method in class com.github.jessemull.microflexinteger.plate.WellIndex

Returns the row ID.

rowString() - Method in class com.github.jessemull.microflexinteger.plate.WellPrecursor

Returns the row ID.

S

SampleStandardDeviation - Class in com.github.jessemull.microflexinteger.stat

This class calculates the sample standard deviation of integer plate stacks, plates, wells and well sets as the square root of the unbiased sample variance.

SampleStandardDeviation() - Constructor for class com.github.jessemull.microflexinteger.stat.SampleStandardDeviation

SampleVariance - Class in com.github.jessemull.microflexinteger.stat

This class calculates the sample variance of integer plate stacks, plates, wells and well sets as the sum of the second moment divided by the number of values less one.

SampleVariance() - Constructor for class com.github.jessemull.microflexinteger.stat.SampleVariance

set(WellSet) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the statistic of each well in the well set.

set(WellSet, int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the statistic of each well in the well set using the values between the beginning and ending indices.

set(WellSet) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the statistic of each well in the well set.

set(WellSet, int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the statistic of each well in the well set using the values between the beginning and ending indices.

set(WellSet, double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the weighted statistic of each well in the well set.

set(WellSet, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the weighted statistic of each well in the well set using the values between the beginning and ending indices.

set(WellSet, double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the weighted statistic of each well in the well set.

set(WellSet, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the weighted statistic of each well in the well set using the values between the beginning and ending indices.

set(WellSet) - Method in class com.github.jessemull.microflexinteger.stat.N

Returns the number of data points for each well in the well set.

set(WellSet, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the percentile of each well in the well set.

set(WellSet, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the percentile of each well in the well set using the values between the beginning and ending indices.

set(WellSet, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the statistic of each well in the well set.

set(WellSet, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the statistic of each well in the well set using the values between the beginning and ending indices.

set(WellSet, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the statistic of each well in the well set.

set(WellSet, int, int, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the statistic of each well in the well set using the values between the beginning and ending indices.

set(WellSet, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the statistic of each well in the well set.

set(WellSet, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the statistic of each well in the well set using the values between the beginning and ending indices.

set(WellSet, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the statistic of each well in the well set.

set(WellSet, int, int, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the statistic of each well in the well set using the values between the beginning and ending indices.

setColumns(int) - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Sets the column number.

setColumns(int) - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Sets the column number.

setColumns(int) - Method in class com.github.jessemull.microflexinteger.io.StackPOJO

Sets the column number.

setColumns(int) - Method in class com.github.jessemull.microflexinteger.io.StackXML

Sets the column number.

setDelimiter(String) - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Sets the delimiter.

setDelimiter(String) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Sets the delimiter for the plate writer.

setDescriptor(String) - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Sets the plate descriptor.

setDescriptor(String) - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Sets the plate descriptor.

setIndex(String) - Method in class com.github.jessemull.microflexinteger.io.ResultWellXML

Sets the index.

setIndex(String) - Method in class com.github.jessemull.microflexinteger.io.SimpleWellPOJO

Sets the index.

setIndex(String) - Method in class com.github.jessemull.microflexinteger.io.SimpleWellXML

Sets the index.

setIndex(String) - Method in class com.github.jessemull.microflexinteger.io.WellPOJO

Sets the index.

setIndex(String) - Method in class com.github.jessemull.microflexinteger.io.WellXML

Sets the index.

setLabel(String) - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Sets the stack label.

setLabel(String) - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Sets the plate label.

setLabel(String) - Method in class com.github.jessemull.microflexinteger.io.ResultPOJO

Sets the result label.

setLabel(String) - Method in class com.github.jessemull.microflexinteger.io.ResultXML

Sets the label.

setLabel(String) - Method in class com.github.jessemull.microflexinteger.io.SimpleWellSetPOJO

Sets the label.

setLabel(String) - Method in class com.github.jessemull.microflexinteger.io.SimpleWellSetXML

Sets the label.

setLabel(String) - Method in class com.github.jessemull.microflexinteger.io.StackPOJO

Sets the stack label.

setLabel(String) - Method in class com.github.jessemull.microflexinteger.io.StackXML

Sets the stack label.

setLabel(String) - Method in class com.github.jessemull.microflexinteger.io.WellSetPOJO

Sets the label.

setLabel(String) - Method in class com.github.jessemull.microflexinteger.io.WellSetXML

Sets the label.

setLabel(String) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Sets the label.

setLabel(String) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Sets the label for the plate stack.

setLabel(String) - Method in class com.github.jessemull.microflexinteger.plate.WellList

Sets the list name.

setLabel(String) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Sets the set label.

setPlates(List<PlatePOJO>) - Method in class com.github.jessemull.microflexinteger.io.PlateListPOJO

Sets the list of plate POJOs.

setPlates(List<PlateXML>) - Method in class com.github.jessemull.microflexinteger.io.PlateListXML

Sets the list of xml plates.

setPlates(List<PlatePOJO>) - Method in class com.github.jessemull.microflexinteger.io.StackPOJO

Sets the list of plates in the stack.

setPlates(List<PlateXML>) - Method in class com.github.jessemull.microflexinteger.io.StackXML

Sets the list of plates in the stack.

setResults(List<ResultPOJO>) - Method in class com.github.jessemull.microflexinteger.io.ResultListPOJO

Sets the list of result POJOs.

setResults(List<ResultXML>) - Method in class com.github.jessemull.microflexinteger.io.ResultListXML

Sets the list of XML results.

setResults(Map<String, Integer>) - Method in class com.github.jessemull.microflexinteger.io.ResultPOJO

Sets the map of well results.

setRows(int) - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Sets the row number.

setRows(int) - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Sets the row number.

setRows(int) - Method in class com.github.jessemull.microflexinteger.io.StackPOJO

Sets the row number.

setRows(int) - Method in class com.github.jessemull.microflexinteger.io.StackXML

Sets the row number.

sets(WellSet, WellSet) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

sets(WellSet, WellSet, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation using the values between the indices.

sets(WellSet, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

sets(WellSet, int[]) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

sets(WellSet, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

sets(WellSet, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

sets(WellSet, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

sets(WellSet) - Method in class com.github.jessemull.microflexinteger.math.MathOperationIntegerUnary

Returns the result of the mathematical operation.

sets(WellSet, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationIntegerUnary

Returns the result of the mathematical operation using the values between the indices.

sets(WellSet, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationShift

Returns the result of the mathematical operation.

sets(WellSet, int, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationShift

Returns the result of the mathematical operation using the values between the indices.

setsAggregated(WellSet) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the aggregated statistic for the well set.

setsAggregated(Collection<WellSet>) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the aggregated statistic for each well set.

setsAggregated(WellSet[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the aggregated statistic for each well set.

setsAggregated(WellSet, int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(Collection<WellSet>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(WellSet[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(WellSet) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the aggregated statistic for the well set.

setsAggregated(Collection<WellSet>) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the aggregated statistic for each well set.

setsAggregated(WellSet[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the aggregated statistic for each well set.

setsAggregated(WellSet, int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(Collection<WellSet>, int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(WellSet[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(WellSet, double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the aggregated weighted statistic for the well set.

setsAggregated(Collection<WellSet>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the aggregated weighted statistic for each well set.

setsAggregated(WellSet[], double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the aggregated weighted statistic for each well set.

setsAggregated(WellSet, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the aggregated weighted statistic for the well set using the values between the indices.

setsAggregated(Collection<WellSet>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the aggregated weighted statistic for each well set using the values between the indices.

setsAggregated(WellSet[], double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the aggregated weighted statistic for each well set using the values between the indices.

setsAggregated(WellSet, double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the aggregated weighted statistic for the well set.

setsAggregated(Collection<WellSet>, double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the aggregated weighted statistic for each well set.

setsAggregated(WellSet[], double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the aggregated weighted statistic for each well set.

setsAggregated(WellSet, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the aggregated weighted statistic for the well set using the values between the indices.

setsAggregated(Collection<WellSet>, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the aggregated weighted statistic for each well set using the values between the indices.

setsAggregated(WellSet[], double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the aggregated weighted statistic for each well set using the values between the indices.

setsAggregated(WellSet) - Method in class com.github.jessemull.microflexinteger.stat.N

Returns the aggregated number of data points for the well set.

setsAggregated(Collection<WellSet>) - Method in class com.github.jessemull.microflexinteger.stat.N

Returns the aggregated number of data points for each well set.

setsAggregated(WellSet[]) - Method in class com.github.jessemull.microflexinteger.stat.N

Returns the aggregated number of data points for each well set.

setsAggregated(WellSet, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the aggregated percentile for the well set.

setsAggregated(Collection<WellSet>, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the aggregated percentile for each well set.

setsAggregated(WellSet[], int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the aggregated percentile for each well set.

setsAggregated(WellSet, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the aggregated percentile for each well set using the values between the indices.

setsAggregated(Collection<WellSet>, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the aggregated percentile for each well set using the values between the indices.

setsAggregated(WellSet[], int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the aggregated percentile for each well set using the values between the indices.

setsAggregated(WellSet, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the aggregated statistic for the well set.

setsAggregated(Collection<WellSet>, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the aggregated statistic for each well set.

setsAggregated(WellSet[], int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the aggregated statistic for each well set.

setsAggregated(WellSet, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(Collection<WellSet>, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(WellSet[], int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(WellSet, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the aggregated statistic for the well set.

setsAggregated(Collection<WellSet>, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the aggregated statistic for each well set.

setsAggregated(WellSet[], double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the aggregated statistic for each well set.

setsAggregated(WellSet, int, int, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(Collection<WellSet>, int, int, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(WellSet[], int, int, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(WellSet, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the aggregated statistic for the well set.

setsAggregated(Collection<WellSet>, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the aggregated statistic for each well set.

setsAggregated(WellSet[], int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the aggregated statistic for each well set.

setsAggregated(WellSet, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(Collection<WellSet>, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(WellSet[], int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(WellSet, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the aggregated statistic for the well set.

setsAggregated(Collection<WellSet>, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the aggregated statistic for each well set.

setsAggregated(WellSet[], List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the aggregated statistic for each well set.

setsAggregated(WellSet, int, int, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(Collection<WellSet>, int, int, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the aggregated statistic for each well set using the values between the indices.

setsAggregated(WellSet[], int, int, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the aggregated statistic for each well set using the values between the indices.

setSize(int) - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Sets the size.

setSize(int) - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Sets the size.

setSize(int) - Method in class com.github.jessemull.microflexinteger.io.ResultPOJO

Sets the size.

setSize(int) - Method in class com.github.jessemull.microflexinteger.io.ResultXML

Sets the size.

setSize(int) - Method in class com.github.jessemull.microflexinteger.io.SimpleWellSetPOJO

Sets the size.

setSize(int) - Method in class com.github.jessemull.microflexinteger.io.SimpleWellSetXML

Sets the size.

setSize(int) - Method in class com.github.jessemull.microflexinteger.io.StackPOJO

Sets the size.

setSize(int) - Method in class com.github.jessemull.microflexinteger.io.StackXML

Sets the size.

setSize(int) - Method in class com.github.jessemull.microflexinteger.io.WellPOJO

Sets the size.

setSize(int) - Method in class com.github.jessemull.microflexinteger.io.WellSetPOJO

Sets the size.

setSize(int) - Method in class com.github.jessemull.microflexinteger.io.WellSetXML

Sets the size.

setSize(int) - Method in class com.github.jessemull.microflexinteger.io.WellXML

Sets the size.

setsStrict(WellSet, WellSet) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

setsStrict(WellSet, WellSet, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation using the values between the indices.

setsStrict(WellSet, int[]) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

setsStrict(WellSet, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

setsStrict(WellSet, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

setsStrict(WellSet, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

setStacks(List<StackPOJO>) - Method in class com.github.jessemull.microflexinteger.io.StackListPOJO

Sets the list of stack POJOs.

setStacks(List<StackXML>) - Method in class com.github.jessemull.microflexinteger.io.StackListXML

Sets the list of XML stacks.

setToJSON(WellSet) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well set values in a JSON format.

setToJSON(Collection<WellSet>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the collection of well sets in a JSON format.

setToJSON(WellSet[]) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well set values in a JSON format.

setToJSONAsString(WellSet) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the well set values in a JSON format.

setToJSONAsString(Collection<WellSet>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the collection of well sets in a JSON format.

setToJSONAsString(WellSet[]) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the well set values in a JSON format.

setToXML(WellSet) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well set values in an XML format.

setToXML(Collection<WellSet>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the collection of well sets in an XML format.

setToXML(WellSet[]) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well set values in an XML format.

setToXMLAsString(WellSet) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the well set values in an XML format.

setToXMLAsString(Collection<WellSet>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the collection of well sets in an XML format.

setToXMLAsString(WellSet[]) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the well set values in an XML format.

setType(String) - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Sets the data type.

setType(String) - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Sets the data type.

setType(String) - Method in class com.github.jessemull.microflexinteger.io.ResultPOJO

Sets the type.

setType(String) - Method in class com.github.jessemull.microflexinteger.io.ResultXML

Sets the type.

setType(String) - Method in class com.github.jessemull.microflexinteger.io.StackPOJO

Sets the data type.

setType(String) - Method in class com.github.jessemull.microflexinteger.io.StackXML

Sets the data type.

setType(String) - Method in class com.github.jessemull.microflexinteger.io.WellPOJO

Sets the type.

setType(String) - Method in class com.github.jessemull.microflexinteger.io.WellSetPOJO

Sets the data type.

setType(String) - Method in class com.github.jessemull.microflexinteger.io.WellSetXML

Sets the data type.

setType(String) - Method in class com.github.jessemull.microflexinteger.io.WellXML

Sets the type.

setValue(int) - Method in class com.github.jessemull.microflexinteger.io.ResultWellXML

Sets the value.

setValues(Integer[]) - Method in class com.github.jessemull.microflexinteger.io.SimpleWellPOJO

Sets the values array.

setValues(Integer[]) - Method in class com.github.jessemull.microflexinteger.io.SimpleWellXML

Sets the values array.

setValues(Integer[]) - Method in class com.github.jessemull.microflexinteger.io.WellPOJO

Sets the values array.

setValues(Integer[]) - Method in class com.github.jessemull.microflexinteger.io.WellXML

Sets the values array.

setWells(List<SimpleWellPOJO>) - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Sets the list of wells.

setWells(List<SimpleWellXML>) - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Sets the list of wells.

setWells(List<ResultWellXML>) - Method in class com.github.jessemull.microflexinteger.io.ResultXML

Sets the wells list.

setWells(List<String>) - Method in class com.github.jessemull.microflexinteger.io.SimpleWellSetPOJO

Sets the list of well indices.

setWells(List<String>) - Method in class com.github.jessemull.microflexinteger.io.SimpleWellSetXML

Sets the list of well indices.

setWells(List<WellPOJO>) - Method in class com.github.jessemull.microflexinteger.io.WellListPOJO

Sets the list of well POJOs.

setWells(List<WellXML>) - Method in class com.github.jessemull.microflexinteger.io.WellListXML

Sets the list of XML wells.

setWells(List<SimpleWellPOJO>) - Method in class com.github.jessemull.microflexinteger.io.WellSetPOJO

Sets the list of set wells.

setWells(List<SimpleWellXML>) - Method in class com.github.jessemull.microflexinteger.io.WellSetXML

Sets the list of set wells.

setWellsets(List<SimpleWellSetPOJO>) - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Sets the list of well sets.

setWellsets(List<SimpleWellSetXML>) - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Sets the list of well sets.

setWellsets(List<WellSetPOJO>) - Method in class com.github.jessemull.microflexinteger.io.WellSetListPOJO

Sets the list of well sets.

setWellsets(List<WellSetXML>) - Method in class com.github.jessemull.microflexinteger.io.WellSetListXML

Sets the list of XML well sets.

shortOverflow(Double) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a double to a short.

shortOverflow(Float) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a float to a short.

shortOverflow(Long) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a long to a short.

shortOverflow(Integer) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting an integer to a short.

shortOverflow(Short) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a short to a short.

shortOverflow(BigDecimal) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a BigDecimal to a short.

shortOverflow(BigInteger) - Static method in class com.github.jessemull.microflexinteger.util.OverFlowUtil

Checks for overflow when converting a BigInteger to a short.

Shuffle - Class in com.github.jessemull.microflexinteger.stat

This class shuffles the data values for integer plate stacks, plates, wells and well sets.

Shuffle() - Constructor for class com.github.jessemull.microflexinteger.stat.Shuffle

SimpleWellPOJO - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class for importing or exporting a JSON encoded well in a stack or plate object.

SimpleWellPOJO() - Constructor for class com.github.jessemull.microflexinteger.io.SimpleWellPOJO

SimpleWellPOJO(Well) - Constructor for class com.github.jessemull.microflexinteger.io.SimpleWellPOJO

Creates a simple well POJO from a well object.

SimpleWellSetPOJO - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class for importing or exporting a JSON encoded well set in a plate or stack object.

SimpleWellSetPOJO() - Constructor for class com.github.jessemull.microflexinteger.io.SimpleWellSetPOJO

SimpleWellSetPOJO(WellSet) - Constructor for class com.github.jessemull.microflexinteger.io.SimpleWellSetPOJO

Creates a simple well set POJO from the well set object.

SimpleWellSetXML - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class used to marshal/unmarshal an XML encoded well set in a plate or stack object.

SimpleWellSetXML() - Constructor for class com.github.jessemull.microflexinteger.io.SimpleWellSetXML

SimpleWellSetXML(WellSet) - Constructor for class com.github.jessemull.microflexinteger.io.SimpleWellSetXML

Creates a simple XML well set from a well set object.

SimpleWellXML - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class used to marshal/unmarshal an XML encoded well in a plate or stack object.

SimpleWellXML() - Constructor for class com.github.jessemull.microflexinteger.io.SimpleWellXML

SimpleWellXML(Well) - Constructor for class com.github.jessemull.microflexinteger.io.SimpleWellXML

Creates a simple XML well from a well object.

size() - Method in class com.github.jessemull.microflexinteger.io.PlateListPOJO

Returns the size of the plate list.

size() - Method in class com.github.jessemull.microflexinteger.io.PlateListXML

Returns the size of the plate list.

size() - Method in class com.github.jessemull.microflexinteger.io.ResultListPOJO

Returns the size of the result list.

size() - Method in class com.github.jessemull.microflexinteger.io.ResultListXML

Returns the size of the result list.

size() - Method in class com.github.jessemull.microflexinteger.io.StackListPOJO

Returns the size of the stack list.

size() - Method in class com.github.jessemull.microflexinteger.io.StackListXML

Returns the size of the stack list.

size() - Method in class com.github.jessemull.microflexinteger.io.WellListPOJO

Returns the size of the well list.

size() - Method in class com.github.jessemull.microflexinteger.io.WellListXML

Returns the size of the XML well list.

size() - Method in class com.github.jessemull.microflexinteger.io.WellSetListPOJO

Returns the size of the well set list.

size() - Method in class com.github.jessemull.microflexinteger.io.WellSetListXML

Returns the size of the well set list.

size() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the number of wells.

size() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the number of plates in the stack.

size() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the size of the well data set.

size() - Method in class com.github.jessemull.microflexinteger.plate.WellList

Returns the size of the list.

size() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns the size of the well set.

Skewness - Class in com.github.jessemull.microflexinteger.stat

This class calculates the skewness of integer plate stacks, plates, wells and well sets using the following unbiased formula:

[n / (n - 1) * (n - 2)] * SUMOF(Third Moment / (Standard Deviation)^3) where n is the number of values

Statistical operations can be performed on stacks, plates, sets and wells using standard or aggregated functions.

Skewness() - Constructor for class com.github.jessemull.microflexinteger.stat.Skewness

spentJSONPlates() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the plate objects with an index less than the current index.

spentJSONResults() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the result objects with an index less than the current index.

spentJSONSets() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the set objects with an index less than the current index.

spentJSONStacks() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the stack objects with an index less than the current index.

spentJSONWells() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the well objects with an index less than the current index.

spentXMLPlates() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the plate objects with an index less than the current index.

spentXMLResults() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the result objects with an index less than the current index.

spentXMLSets() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the well set objects with an index less than the current index.

spentXMLStacks() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the stack objects with an index less than the current index.

spentXMLWells() - Method in class com.github.jessemull.microflexinteger.io.PlateReader

Returns a list containing the well objects with an index less than the current index.

sqrt(BigInteger) - Static method in class com.github.jessemull.microflexinteger.util.ImmutableMathUtil

Returns the square root of a big integer

sqrt(BigDecimal) - Static method in class com.github.jessemull.microflexinteger.util.ImmutableMathUtil

Returns the square root of a BigDecimal.

sqrt(BigDecimal, MathContext) - Static method in class com.github.jessemull.microflexinteger.util.ImmutableMathUtil

Returns the square root of a BigDecimal.

Stack - Class in com.github.jessemull.microflexinteger.plate

Scientists commonly refer to a collection of microplates as a stack.

Stack(int) - Constructor for class com.github.jessemull.microflexinteger.plate.Stack

Creates a new plate stack.

Stack(int, int) - Constructor for class com.github.jessemull.microflexinteger.plate.Stack

Creates a new empty plate stack.

Stack(int, String) - Constructor for class com.github.jessemull.microflexinteger.plate.Stack

Creates a new plate stack using the label.

Stack(int, int, String) - Constructor for class com.github.jessemull.microflexinteger.plate.Stack

Creates a new plate stack using the label.

Stack(Plate) - Constructor for class com.github.jessemull.microflexinteger.plate.Stack

Creates a new plate stack using the input plate.

Stack(Plate, String) - Constructor for class com.github.jessemull.microflexinteger.plate.Stack

Creates a new plate stack using the input plate and label.

Stack(Collection<Plate>) - Constructor for class com.github.jessemull.microflexinteger.plate.Stack

Creates a new plate stack using the input collection of plates.

Stack(Collection<Plate>, String) - Constructor for class com.github.jessemull.microflexinteger.plate.Stack

Creates a new plate stack using the input collection of plates and label.

Stack(Plate[]) - Constructor for class com.github.jessemull.microflexinteger.plate.Stack

Creates a new plate stack using the input plate array.

Stack(Plate[], String) - Constructor for class com.github.jessemull.microflexinteger.plate.Stack

Creates a new plate stack using the input plate array and label.

Stack(Stack) - Constructor for class com.github.jessemull.microflexinteger.plate.Stack

Creates a new plate stack from an existing plate stack.

StackListPOJO - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class for importing or exporting a list of JSON encoded stack objects.

StackListPOJO() - Constructor for class com.github.jessemull.microflexinteger.io.StackListPOJO

StackListPOJO(Stack) - Constructor for class com.github.jessemull.microflexinteger.io.StackListPOJO

Creates a stack list POJO from a stack object.

StackListPOJO(Collection<Stack>) - Constructor for class com.github.jessemull.microflexinteger.io.StackListPOJO

Creates a stack list POJO from a collection of stack objects.

StackListPOJO(Stack[]) - Constructor for class com.github.jessemull.microflexinteger.io.StackListPOJO

Creates a stack loist POJO from an array of stack objects.

StackListXML - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class used to marshal/unmarshal a list of XML encoded stack objects.

StackListXML() - Constructor for class com.github.jessemull.microflexinteger.io.StackListXML

StackListXML(Stack) - Constructor for class com.github.jessemull.microflexinteger.io.StackListXML

Creates an XML stack list from a stack object.

StackListXML(Collection<Stack>) - Constructor for class com.github.jessemull.microflexinteger.io.StackListXML

Creates an XML stack list from a collection of stack objects.

StackListXML(Stack[]) - Constructor for class com.github.jessemull.microflexinteger.io.StackListXML

Creates an XML stack list from an array of stack objects.

StackPOJO - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class for importing or exporting a JSON encoded stack object.

StackPOJO() - Constructor for class com.github.jessemull.microflexinteger.io.StackPOJO

StackPOJO(Stack) - Constructor for class com.github.jessemull.microflexinteger.io.StackPOJO

Creates a stack POJO from a stack object.

stacks(Stack, Stack) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

stacks(Stack, Stack, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation using the values between the indices.

stacks(Stack, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

stacks(Stack, int[]) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

stacks(Stack, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

stacks(Stack, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

stacks(Stack, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

stacks(Stack) - Method in class com.github.jessemull.microflexinteger.math.MathOperationIntegerUnary

Returns the result of the mathematical operation.

stacks(Stack, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationIntegerUnary

Returns the result of the mathematical operation.

stacks(Stack, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationShift

Returns the result of the mathematical operation.

stacks(Stack, int, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationShift

Returns the result of the mathematical operation.

stacksStrict(Stack, Stack) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

stacksStrict(Stack, Stack, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation using the values between the indices.

stacksStrict(Stack, int[]) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

stacksStrict(Stack, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

stacksStrict(Stack, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

stacksStrict(Stack, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

stackToJSON(Stack) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the plate stack in a JSON format.

stackToJSON(Collection<Stack>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the collection of plate stacks in a JSON format.

stackToJSON(Stack[]) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the array of plate stacks in a JSON format.

stackToJSONAsString(Stack) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the plate stack in a JSON format.

stackToJSONAsString(Collection<Stack>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the collection of plate stacks in a JSON format.

stackToJSONAsString(Stack[]) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the array of plate stacks in a JSON format.

stackToXML(Stack) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the plate stack in an XML format.

stackToXML(Collection<Stack>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the collection of plate stacks in an XML format.

stackToXML(Stack[]) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the array of plate stacks in an XML format.

stackToXMLAsString(Stack) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the plate stack in an XML format.

stackToXMLAsString(Collection<Stack>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the collection of plate stacks in an XML format.

stackToXMLAsString(Stack[]) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the array of plate stacks in an XML format.

StackXML - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class used to marshal/unmarshal an XML encoded stack object.

StackXML() - Constructor for class com.github.jessemull.microflexinteger.io.StackXML

StackXML(Stack) - Constructor for class com.github.jessemull.microflexinteger.io.StackXML

Creates an XML stack from a stack object.

StandardError - Class in com.github.jessemull.microflexinteger.stat

This class calculates the standard error of integer plate stacks, plates, wells and well sets as the square root of the unbiased sample variance.

StandardError() - Constructor for class com.github.jessemull.microflexinteger.stat.StandardError

subList(int, int) - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns a new well containing the values within the indices.

subSet(Well, boolean, Well, boolean) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns a view of the portion of this set whose wells range from the first input well to the second input well.

subSet(Well, Well) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns a view of the portion of this set whose wells range from the first input well inclusive to the second input well inclusive.

subSet(Plate, boolean, Plate, boolean) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns a view of the portion of this set whose plates range from the first input plate to the second input plate.

subSet(Plate, Plate) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns a view of the portion of this set whose plates range from the first input plate inclusive to the second input plate inclusive.

subSet(Well, boolean, Well, boolean) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a view of the portion of this set whose wells range from the first input well to the second input well.

subSet(Well, Well) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a view of the portion of this set whose wells range from the first input well inclusive to the second input well inclusive.

subSet(int, boolean, int, boolean) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a view of the portion of this set between the indices.

subSet(int, int) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a view of the portion of this set between the indices.

Subtraction - Class in com.github.jessemull.microflexinteger.math

This class performs subtraction operations with two arguments for integer plate stacks, plates, wells and well sets.

Subtraction() - Constructor for class com.github.jessemull.microflexinteger.math.Subtraction

Sum - Class in com.github.jessemull.microflexinteger.stat

This class calculates the sum of integer plate stacks, plates, wells and well sets.

Sum() - Constructor for class com.github.jessemull.microflexinteger.stat.Sum

SumOfSquares - Class in com.github.jessemull.microflexinteger.stat

This class calculates the sum of squares for integer plate stacks, plates, wells and well sets.

SumOfSquares() - Constructor for class com.github.jessemull.microflexinteger.stat.SumOfSquares

T

tailSet(Well) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns a view of the portion of this set whose wells are greater than or equal to the input well.

tailSet(Well, boolean) - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns a view of the portion of this set whose wells are greater than (or equal to, if inclusive is true) the input well.

tailSet(Plate) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns a view of the portion of this stack whose plates are greater than or equal to the input plate.

tailSet(Plate, boolean) - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns a view of the portion of this stack whose plates are greater than (or equal to, if inclusive is true) the input plate.

tailSet(Well) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a view of the portion of this set whose wells are greater than or equal to the input well.

tailSet(Well, boolean) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a view of the portion of this set whose wells are greater than (or equal to, if inclusive is true) the input well.

tailSet(int) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a view of the portion of this set whose wells are greater than or equal to the index.

tailSet(int, boolean) - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a view of the portion of this set whose wells are greater than (or equal to, if inclusive is true) the index.

toArray() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the plate wells in an array.

toArray() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns an array of the plates in the stack.

toBigDecimal() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the well data set as a list of big decimals.

toBigDecimalArray() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the well data set as a list of big decimals.

toBigDecimalArray(List<Integer>) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Converts a list of integers to an array of BigDecimals.

toBigDecimalList(List<Integer>) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Converts a list of integers to a list of BigDecimals.

toBigIntArray(List<Integer>) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Converts a list of integers to an array of BigIntegers.

toBigInteger() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the well data set as a list of big integers.

toBigIntegerArray() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the well data set as an array of big integers.

toBigIntList(List<Integer>) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Converts a list of integers to a list of BigIntegers.

toByte() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the well data set as a list of bytes.

toByteArray() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the well data set as an array of bytes.

toByteArray(List<Integer>) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Converts a list of integers to an array of bytes.

toByteList(List<Integer>) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Converts a list of integers to a list of bytes.

toDouble() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the well data set as a list of doubles.

toDoubleArray() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the well data set as an array of doubles.

toDoubleArray(List<Integer>) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Converts a list of integers to an array of doubles.

toDoubleList(List<Integer>) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Converts a list of integers to a list of doubles.

toFloat() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the well data set as a list of floats.

toFloatArray() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the well data set as an array of floats.

toFloatArray(List<Integer>) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Converts a list of integers to an array of floats.

toFloatList(List<Integer>) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Converts a list of integers to a list of floats.

toInt() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the well data set as an array of shorts.

toIntArray() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the well data set as an array of integers.

toInteger(Number) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Safely converts a number to an integer.

toInteger(Object) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Safely converts a number to an integer.

toIntegerArray(List<Integer>) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Converts a list of integers to an array of integers.

toIntegerList(Collection<Number>) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Converts a collection of numbers to a list of integers.

toLong() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the well data set as a list of longs.

toLongArray() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the well data set as an array of longs.

toLongArray(List<Integer>) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Converts a list of integers to an array of longs.

toLongList(List<Integer>) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Converts a list of integers to a list of longs.

toPlateObject() - Method in class com.github.jessemull.microflexinteger.io.PlatePOJO

Returns a PlateInteger object.

toPlateObject() - Method in class com.github.jessemull.microflexinteger.io.PlateXML

Returns a PlateInteger object.

toShort() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the well data set as a list of shorts.

toShortArray() - Method in class com.github.jessemull.microflexinteger.plate.Well

Returns the well data set as an array of shorts.

toShortArray(List<Integer>) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Converts a list of integers to an array of shorts.

toShortList(List<Integer>) - Static method in class com.github.jessemull.microflexinteger.util.IntegerUtil

Converts a list of integers to a list of shorts.

toStackObject() - Method in class com.github.jessemull.microflexinteger.io.StackPOJO

Returns a StackInteger object.

toStackObject() - Method in class com.github.jessemull.microflexinteger.io.StackXML

Returns a StackInteger object.

toString() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the plate descriptor and label.

toString() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the stack descriptor and label.

toString() - Method in class com.github.jessemull.microflexinteger.plate.WellIndex

Returns a string containing the well.

toString() - Method in class com.github.jessemull.microflexinteger.plate.WellList

Return a string containing the label and indices.

toString() - Method in class com.github.jessemull.microflexinteger.plate.WellPrecursor

Returns row ID plus column number.

toString() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns a string containing the label and wells.

toStringArray() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns the well set as an array of well IDs.

toWellArray() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns the well set as an array of wells.

toWellObject() - Method in class com.github.jessemull.microflexinteger.io.ResultWellXML

Returns a WellInteger object.

toWellObject() - Method in class com.github.jessemull.microflexinteger.io.SimpleWellPOJO

Returns a WellInteger object.

toWellObject() - Method in class com.github.jessemull.microflexinteger.io.SimpleWellXML

Returns a WellInteger object.

toWellObject() - Method in class com.github.jessemull.microflexinteger.io.WellPOJO

Returns a WellInteger object.

toWellObject() - Method in class com.github.jessemull.microflexinteger.io.WellXML

Returns a WellInteger object.

toWellSetObject() - Method in class com.github.jessemull.microflexinteger.io.ResultXML

Returns a WellSetInteger object.

toWellSetObject() - Method in class com.github.jessemull.microflexinteger.io.SimpleWellSetPOJO

Returns a WellSetInteger object.

toWellSetObject() - Method in class com.github.jessemull.microflexinteger.io.SimpleWellSetXML

Returns a WellSetInteger object.

toWellSetObject() - Method in class com.github.jessemull.microflexinteger.io.WellSetPOJO

Returns a WellSetInteger object.

toWellSetObject() - Method in class com.github.jessemull.microflexinteger.io.WellSetXML

Returns a WellSetInteger object.

type() - Method in class com.github.jessemull.microflexinteger.plate.Plate

Returns the plate type.

type() - Method in class com.github.jessemull.microflexinteger.plate.Stack

Returns the plate type.

type() - Method in class com.github.jessemull.microflexinteger.plate.WellPrecursor

Returns the numerical data type as an integer value.

typeString() - Method in class com.github.jessemull.microflexinteger.plate.WellPrecursor

Returns the numerical data type as a String.

V

validateGroup(int, int, WellList) - Static method in class com.github.jessemull.microflexinteger.util.ValUtil

Validates the group by checking for wells outside the valid range.

validatePlateInteger(Plate, Plate) - Static method in class com.github.jessemull.microflexinteger.util.ValUtil

Validates the plate by checking for null values and invalid dimensions.

validatePlateInteger(Plate, Collection<Plate>) - Static method in class com.github.jessemull.microflexinteger.util.ValUtil

Validates each plate in the collection by checking for null values and invalid dimensions.

validatePlateInteger(Plate, Plate[]) - Static method in class com.github.jessemull.microflexinteger.util.ValUtil

Validate each plate by checking for null values and invalid dimensions.

validatePlateInteger(int, int, Plate) - Static method in class com.github.jessemull.microflexinteger.util.ValUtil

Validates the plate by checking for null values and invalid dimensions.

validatePlateInteger(int, int, Collection<Plate>) - Static method in class com.github.jessemull.microflexinteger.util.ValUtil

Validates each plate in the collection by checking for null values and invalid dimensions.

validatePlateInteger(int, int, Plate[]) - Static method in class com.github.jessemull.microflexinteger.util.ValUtil

Validates each plate by checking for null values and invalid dimensions.

validateSet(int, int, WellSet) - Static method in class com.github.jessemull.microflexinteger.util.ValUtil

Validates the set by checking for wells outside the valid range.

validateWell(int, int, Well) - Static method in class com.github.jessemull.microflexinteger.util.ValUtil

Validates the well by checking for invalid indices.

ValUtil - Class in com.github.jessemull.microflexinteger.util

This class validates well, well sets, plates and stacks by checking for null values and wells outside a range of indices.

ValUtil() - Constructor for class com.github.jessemull.microflexinteger.util.ValUtil

W

Well - Class in com.github.jessemull.microflexinteger.plate

This class represents a well in a microplate.

Well(int, int) - Constructor for class com.github.jessemull.microflexinteger.plate.Well

Creates a new Well object from row and column integers.

Well(int, int, Collection<Integer>) - Constructor for class com.github.jessemull.microflexinteger.plate.Well

Creates a new Well object using the numerical type flag, row number, column number and data set.

Well(int, int, Integer[]) - Constructor for class com.github.jessemull.microflexinteger.plate.Well

Creates a new Well object using the numerical type flag, row number, column number and data set.

Well(String, int) - Constructor for class com.github.jessemull.microflexinteger.plate.Well

Creates a new Well object using the numerical type flag, row string and column number.

Well(String, int, Collection<Integer>) - Constructor for class com.github.jessemull.microflexinteger.plate.Well

Creates a new Well object using the numerical type flag, row string, column number and data set.

Well(String, int, Integer[]) - Constructor for class com.github.jessemull.microflexinteger.plate.Well

Creates a new Well object using the numerical type flag, row string, column number and data set.

Well(int, String) - Constructor for class com.github.jessemull.microflexinteger.plate.Well

Creates a new Well object using the numerical type flag, row number and column string.

Well(int, String, Collection<Integer>) - Constructor for class com.github.jessemull.microflexinteger.plate.Well

Creates a new Well object using the numerical type flag, row number and column string.

Well(int, String, Integer[]) - Constructor for class com.github.jessemull.microflexinteger.plate.Well

Creates a new Well object using the numerical type flag, row number and column string.

Well(String, String) - Constructor for class com.github.jessemull.microflexinteger.plate.Well

Creates a new Well object using the numerical type flag, row and column strings.

Well(String, String, Collection<Integer>) - Constructor for class com.github.jessemull.microflexinteger.plate.Well

Creates a new Well object using the numerical type flag, row string, column string and data set.

Well(String, String, Integer[]) - Constructor for class com.github.jessemull.microflexinteger.plate.Well

Creates a new Well object using the numerical type flag, row and column strings.

Well(String) - Constructor for class com.github.jessemull.microflexinteger.plate.Well

Creates a new Well object from a string holding the column and row values.

Well(String, Collection<Integer>) - Constructor for class com.github.jessemull.microflexinteger.plate.Well

Creates a new Well object using the numerical type flag and a string holding the column and row values.

Well(String, Integer[]) - Constructor for class com.github.jessemull.microflexinteger.plate.Well

Creates a new Well object using the numerical type flag and a string holding the column and row values.

Well(Well) - Constructor for class com.github.jessemull.microflexinteger.plate.Well

Clones a double well without invoking clone.

well(Well) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the well statistic.

well(Well, int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatistic

Returns the well statistic for the values between the beginning and ending indices.

well(Well) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the well statistic.

well(Well, int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticList

Returns the well statistic for the values between the beginning and ending indices.

well(Well, double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the weighted well statistic.

well(Well, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticListWeights

Returns the well weighted statistic for the values between the beginning and ending indices.

well(Well, double[]) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the weighted well statistic.

well(Well, double[], int, int) - Method in class com.github.jessemull.microflexinteger.stat.DescriptiveStatisticWeights

Returns the well weighted statistic for the values between the beginning and ending indices.

well(Well) - Method in class com.github.jessemull.microflexinteger.stat.N

Returns the number of well data points.

well(Well, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the well percentile.

well(Well, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.Percentile

Returns the well percentile for the values between the beginning and ending indices.

well(Well, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the well statistic.

well(Well, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatistic

Returns the well statistic for the values between the beginning and ending indices.

well(Well, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the well statistic.

well(Well, int, int, double) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticIntegers

Returns the well statistic for the values between the beginning and ending indices.

well(Well, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the well statistic.

well(Well, int, int, int) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticList

Returns the well statistic for the values between the beginning and ending indices.

well(Well, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the well statistic.

well(Well, int, int, List<Double>) - Method in class com.github.jessemull.microflexinteger.stat.QuantileStatisticListsIntegers

Returns the well statistic for the values between the beginning and ending indices.

WellIndex - Class in com.github.jessemull.microflexinteger.plate

A wrapper for a row and column index pair.

WellIndex(int, int) - Constructor for class com.github.jessemull.microflexinteger.plate.WellIndex

Creates a new well index object.

WellList - Class in com.github.jessemull.microflexinteger.plate

Internal data structure to hold lists of well indices for well sets or plates.

WellList() - Constructor for class com.github.jessemull.microflexinteger.plate.WellList

Creates a new well list object;

WellList(String) - Constructor for class com.github.jessemull.microflexinteger.plate.WellList

Creates a new well list object with the label.

WellList(Collection<WellIndex>) - Constructor for class com.github.jessemull.microflexinteger.plate.WellList

Creates a new well list from a collection of indices.

WellList(Collection<WellIndex>, String) - Constructor for class com.github.jessemull.microflexinteger.plate.WellList

Creates a new well list from a collection of indices and a label.

WellList(WellIndex[]) - Constructor for class com.github.jessemull.microflexinteger.plate.WellList

Creates a new well list from an array.

WellList(WellIndex[], String) - Constructor for class com.github.jessemull.microflexinteger.plate.WellList

Creates a new well list from an array of indices and a label.

WellList(WellList) - Constructor for class com.github.jessemull.microflexinteger.plate.WellList

Creates a new well list from an existing well list.

wellList() - Method in class com.github.jessemull.microflexinteger.plate.WellSet

Returns all indices in the set in a well list.

WellListPOJO - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class for importing or exporting a list of JSON encoded well objects.

WellListPOJO() - Constructor for class com.github.jessemull.microflexinteger.io.WellListPOJO

WellListPOJO(Well) - Constructor for class com.github.jessemull.microflexinteger.io.WellListPOJO

Creates a well list POJO from a well object.

WellListPOJO(Collection<Well>) - Constructor for class com.github.jessemull.microflexinteger.io.WellListPOJO

Creates a well list POJO from a collection of well objects.

WellListPOJO(Well[]) - Constructor for class com.github.jessemull.microflexinteger.io.WellListPOJO

Creates a well list POJO from an array of well objects.

WellListXML - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class used to marshal/unmarshal a list of XML encoded well objects.

WellListXML() - Constructor for class com.github.jessemull.microflexinteger.io.WellListXML

WellListXML(Well) - Constructor for class com.github.jessemull.microflexinteger.io.WellListXML

Creates an XML well list from a well object.

WellListXML(Collection<Well>) - Constructor for class com.github.jessemull.microflexinteger.io.WellListXML

Creates an XML well list from a collection of well objects.

WellListXML(Well[]) - Constructor for class com.github.jessemull.microflexinteger.io.WellListXML

Creates an XML well list from an array of well objects.

WellPOJO - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class for importing or exporting a JSON encoded well object.

WellPOJO() - Constructor for class com.github.jessemull.microflexinteger.io.WellPOJO

WellPOJO(Well) - Constructor for class com.github.jessemull.microflexinteger.io.WellPOJO

Creates a well POJO from the well object.

WellPOJO(String, int, Integer[], String) - Constructor for class com.github.jessemull.microflexinteger.io.WellPOJO

Creates a well POJO from the well object.

WellPrecursor<T extends Number> - Class in com.github.jessemull.microflexinteger.plate

This class represents a well in a microplate.

WellPrecursor(int, int, int) - Constructor for class com.github.jessemull.microflexinteger.plate.WellPrecursor

Creates a new Well object from row and column integers.

WellPrecursor(int, String, int) - Constructor for class com.github.jessemull.microflexinteger.plate.WellPrecursor

Creates a new Well object using the numerical type flag, row string and column number.

WellPrecursor(int, int, String) - Constructor for class com.github.jessemull.microflexinteger.plate.WellPrecursor

Creates a new Well object using the numerical type flag, row number and column string.

WellPrecursor(int, String, String) - Constructor for class com.github.jessemull.microflexinteger.plate.WellPrecursor

Creates a new Well object using the numerical type flag, row and column strings.

WellPrecursor(int, String) - Constructor for class com.github.jessemull.microflexinteger.plate.WellPrecursor

Creates a new Well object from a string holding the column and row values.

WellPrecursor(WellPrecursor<T>) - Constructor for class com.github.jessemull.microflexinteger.plate.WellPrecursor

Clones a well without invoking clone.

wells(Well, Well) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

wells(Well, Well, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation using the data between the indices.

wells(Well, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

wells(Well, int[]) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

wells(Well, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

wells(Well, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

wells(Well, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

wells(Well) - Method in class com.github.jessemull.microflexinteger.math.MathOperationIntegerUnary

Returns the result of the mathematical operation.

wells(Well, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationIntegerUnary

Returns the result of the mathematical operation.

wells(Well, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationShift

Returns the result of the mathematical operation.

wells(Well, int, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationShift

Returns the result of the mathematical operation using the values between the indices.

WellSet - Class in com.github.jessemull.microflexinteger.plate

This class represents a set of wells.

WellSet() - Constructor for class com.github.jessemull.microflexinteger.plate.WellSet

Creates a new Integer well set.

WellSet(Collection<Well>) - Constructor for class com.github.jessemull.microflexinteger.plate.WellSet

Creates a new well set from a collection of wells.

WellSet(Collection<Well>, String) - Constructor for class com.github.jessemull.microflexinteger.plate.WellSet

Creates a new well set from a collection of wells and a label.

WellSet(WellSet) - Constructor for class com.github.jessemull.microflexinteger.plate.WellSet

Creates a new well set from another well set.

WellSet(WellSet, String) - Constructor for class com.github.jessemull.microflexinteger.plate.WellSet

Creates a new well set from another well set and a label.

WellSet(Well[]) - Constructor for class com.github.jessemull.microflexinteger.plate.WellSet

Creates a new well set from an array of wells.

WellSet(Well[], String) - Constructor for class com.github.jessemull.microflexinteger.plate.WellSet

Creates a new well set from an array of wells and a label.

WellSetListPOJO - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class for importing or exporting a list of JSON encoded well set objects.

WellSetListPOJO() - Constructor for class com.github.jessemull.microflexinteger.io.WellSetListPOJO

WellSetListPOJO(WellSet) - Constructor for class com.github.jessemull.microflexinteger.io.WellSetListPOJO

Creates a well set list POJO from a well set object.

WellSetListPOJO(Collection<WellSet>) - Constructor for class com.github.jessemull.microflexinteger.io.WellSetListPOJO

Creates a well set list POJO from a collection of well set objects.

WellSetListPOJO(WellSet[]) - Constructor for class com.github.jessemull.microflexinteger.io.WellSetListPOJO

Creates a well set list POJO from an array of well set objects.

WellSetListXML - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class used to marshal/unmarshal a list of XML encoded well set objects.

WellSetListXML() - Constructor for class com.github.jessemull.microflexinteger.io.WellSetListXML

WellSetListXML(WellSet) - Constructor for class com.github.jessemull.microflexinteger.io.WellSetListXML

Creates an xml well set list from a well set object.

WellSetListXML(Collection<WellSet>) - Constructor for class com.github.jessemull.microflexinteger.io.WellSetListXML

Creates an xml well set list from a collection of well set objects.

WellSetListXML(WellSet[]) - Constructor for class com.github.jessemull.microflexinteger.io.WellSetListXML

Creates an XML well set list from an array of well set objects.

WellSetPOJO - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class for importing or exporting a JSON encoded well set object.

WellSetPOJO() - Constructor for class com.github.jessemull.microflexinteger.io.WellSetPOJO

WellSetPOJO(WellSet) - Constructor for class com.github.jessemull.microflexinteger.io.WellSetPOJO

Creates a well set POJO from a well set object.

WellSetXML - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class used to marshal/unmarshal an XML encoded well set object.

WellSetXML() - Constructor for class com.github.jessemull.microflexinteger.io.WellSetXML

WellSetXML(WellSet) - Constructor for class com.github.jessemull.microflexinteger.io.WellSetXML

Creates an XML well set from a well set object.

wellsStrict(Well, Well) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

wellsStrict(Well, Well, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation using the data between the indices.

wellsStrict(Well, int[]) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

wellsStrict(Well, int[], int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

wellsStrict(Well, Collection<Integer>) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

wellsStrict(Well, Collection<Integer>, int, int) - Method in class com.github.jessemull.microflexinteger.math.MathOperationBinary

Returns the result of the mathematical operation.

wellToJSON(Well) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well values in a JSON format.

wellToJSON(Collection<Well>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the collection of wells in a JSON format.

wellToJSON(Well[]) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the wells values in the array in a JSON format.

wellToJSONAsString(Well) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the well values in a JSON format.

wellToJSONAsString(Collection<Well>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the collection of wells in a JSON format.

wellToJSONAsString(Well[]) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the well values in the array in a JSON format.

wellToXML(Well) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well values in an XML format.

wellToXML(Collection<Well>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the collection of well values in an XML format.

wellToXML(Well[]) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well values in the array in an XML format.

wellToXMLAsString(Well) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the well values in an XML format.

wellToXMLAsString(Collection<Well>) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Returns a string containing the collection of well values in an XML format.

wellToXMLAsString(Well[]) - Method in class com.github.jessemull.microflexinteger.io.PlateWriter

Prints the well values in the array in an XML format.

WellXML - Class in com.github.jessemull.microflexinteger.io

This is a wrapper class used to marshal/unmarshal an XML encoded well object.

WellXML() - Constructor for class com.github.jessemull.microflexinteger.io.WellXML

WellXML(Well) - Constructor for class com.github.jessemull.microflexinteger.io.WellXML

Creates a well XML object from a well integer object.

WellXML(String, int, Integer[], String) - Constructor for class com.github.jessemull.microflexinteger.io.WellXML

Creates a well XML object from a well integer object.

X

XOR - Class in com.github.jessemull.microflexinteger.math

This class performs logical XOR operations with two arguments for integer plate stacks, plates, wells and well sets.

XOR() - Constructor for class com.github.jessemull.microflexinteger.math.XOR

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