Uses of Class
org.biojava.nbio.aaproperties.profeat.IProfeatProperties.TRANSITION

Packages that use IProfeatProperties.TRANSITION

Package	Description
org.biojava.nbio.aaproperties.profeat	Set of classes that responsible for providing APIs access to generate some PROFEAT properties of protein sequences.

Uses of IProfeatProperties.TRANSITION in org.biojava.nbio.aaproperties.profeat

Methods in org.biojava.nbio.aaproperties.profeat that return IProfeatProperties.TRANSITION

Modifier and Type	Method and Description
static IProfeatProperties.TRANSITION	IProfeatProperties.TRANSITION.valueOf(String name) Returns the enum constant of this type with the specified name.
static IProfeatProperties.TRANSITION[]	IProfeatProperties.TRANSITION.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.biojava.nbio.aaproperties.profeat that return types with arguments of type IProfeatProperties.TRANSITION

Modifier and Type	Method and Description
static Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.TRANSITION,Double>>	ProfeatProperties.getTransition(ProteinSequence sequence)
Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.TRANSITION,Double>>	IProfeatProperties.getTransition(ProteinSequence sequence)
Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.TRANSITION,Double>>	ProfeatPropertiesImpl.getTransition(ProteinSequence sequence)
static Map<IProfeatProperties.TRANSITION,Double>	ProfeatProperties.getTransition(ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute)
Map<IProfeatProperties.TRANSITION,Double>	IProfeatProperties.getTransition(ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute)
Map<IProfeatProperties.TRANSITION,Double>	ProfeatPropertiesImpl.getTransition(ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute)
static Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.TRANSITION,Double>>	ProfeatProperties.getTransition(String sequence)
static Map<IProfeatProperties.TRANSITION,Double>	ProfeatProperties.getTransition(String sequence, IProfeatProperties.ATTRIBUTE attribute)

Methods in org.biojava.nbio.aaproperties.profeat with parameters of type IProfeatProperties.TRANSITION

Modifier and Type	Method and Description
static double	ProfeatProperties.getTransition(ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute, IProfeatProperties.TRANSITION transition) An adaptor method which returns the number of transition between the specified groups for the given attribute with respect to the length of sequence.
double	IProfeatProperties.getTransition(ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute, IProfeatProperties.TRANSITION transition) Returns the number of transition between the specified groups for the given attribute with respect to the length of sequence.
double	ProfeatPropertiesImpl.getTransition(ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute, IProfeatProperties.TRANSITION transition)
static double	ProfeatProperties.getTransition(String sequence, IProfeatProperties.ATTRIBUTE attribute, IProfeatProperties.TRANSITION transition)