Uses of Class
org.biojava.nbio.aaproperties.profeat.IProfeatProperties.GROUPING

Packages that use IProfeatProperties.GROUPING

Package	Description
org.biojava.nbio.aaproperties.profeat	Set of classes that responsible for providing APIs access to generate some PROFEAT properties of protein sequences.

Uses of IProfeatProperties.GROUPING in org.biojava.nbio.aaproperties.profeat

Methods in org.biojava.nbio.aaproperties.profeat that return IProfeatProperties.GROUPING

Modifier and Type	Method	Description
static IProfeatProperties.GROUPING	IProfeatProperties.GROUPING.valueOf(String name)	Returns the enum constant of this type with the specified name.
static IProfeatProperties.GROUPING[]	IProfeatProperties.GROUPING.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.biojava.nbio.aaproperties.profeat that return types with arguments of type IProfeatProperties.GROUPING

Modifier and Type	Method	Description
Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.GROUPING,Double>>	IProfeatProperties.getComposition(org.biojava.nbio.core.sequence.ProteinSequence sequence)
Map<IProfeatProperties.GROUPING,Double>	IProfeatProperties.getComposition(org.biojava.nbio.core.sequence.ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute)
static Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.GROUPING,Double>>	ProfeatProperties.getComposition(String sequence)
static Map<IProfeatProperties.GROUPING,Double>	ProfeatProperties.getComposition(String sequence, IProfeatProperties.ATTRIBUTE attribute)
static Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.GROUPING,Double>>	ProfeatProperties.getComposition(org.biojava.nbio.core.sequence.ProteinSequence sequence)
static Map<IProfeatProperties.GROUPING,Double>	ProfeatProperties.getComposition(org.biojava.nbio.core.sequence.ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute)
Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.GROUPING,Double>>	ProfeatPropertiesImpl.getComposition(org.biojava.nbio.core.sequence.ProteinSequence sequence)
Map<IProfeatProperties.GROUPING,Double>	ProfeatPropertiesImpl.getComposition(org.biojava.nbio.core.sequence.ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute)
Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.GROUPING,Map<IProfeatProperties.DISTRIBUTION,Double>>>	IProfeatProperties.getDistributionPosition(org.biojava.nbio.core.sequence.ProteinSequence sequence)
Map<IProfeatProperties.GROUPING,Map<IProfeatProperties.DISTRIBUTION,Double>>	IProfeatProperties.getDistributionPosition(org.biojava.nbio.core.sequence.ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute)
static Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.GROUPING,Map<IProfeatProperties.DISTRIBUTION,Double>>>	ProfeatProperties.getDistributionPosition(String sequence)
static Map<IProfeatProperties.GROUPING,Map<IProfeatProperties.DISTRIBUTION,Double>>	ProfeatProperties.getDistributionPosition(String sequence, IProfeatProperties.ATTRIBUTE attribute)
static Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.GROUPING,Map<IProfeatProperties.DISTRIBUTION,Double>>>	ProfeatProperties.getDistributionPosition(org.biojava.nbio.core.sequence.ProteinSequence sequence)
static Map<IProfeatProperties.GROUPING,Map<IProfeatProperties.DISTRIBUTION,Double>>	ProfeatProperties.getDistributionPosition(org.biojava.nbio.core.sequence.ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute)
Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.GROUPING,Map<IProfeatProperties.DISTRIBUTION,Double>>>	ProfeatPropertiesImpl.getDistributionPosition(org.biojava.nbio.core.sequence.ProteinSequence sequence)
Map<IProfeatProperties.GROUPING,Map<IProfeatProperties.DISTRIBUTION,Double>>	ProfeatPropertiesImpl.getDistributionPosition(org.biojava.nbio.core.sequence.ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute)

Methods in org.biojava.nbio.aaproperties.profeat with parameters of type IProfeatProperties.GROUPING

Modifier and Type	Method	Description
double	IProfeatProperties.getComposition(org.biojava.nbio.core.sequence.ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute, IProfeatProperties.GROUPING group)	Returns the composition of the specific grouping for the given attribute.
static double	ProfeatProperties.getComposition(String sequence, IProfeatProperties.ATTRIBUTE attribute, IProfeatProperties.GROUPING group)
static double	ProfeatProperties.getComposition(org.biojava.nbio.core.sequence.ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute, IProfeatProperties.GROUPING group)	An adaptor method which returns the composition of the specific grouping for the given attribute.
double	ProfeatPropertiesImpl.getComposition(org.biojava.nbio.core.sequence.ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute, IProfeatProperties.GROUPING group)
Map<IProfeatProperties.DISTRIBUTION,Double>	IProfeatProperties.getDistributionPosition(org.biojava.nbio.core.sequence.ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute, IProfeatProperties.GROUPING group)
double	IProfeatProperties.getDistributionPosition(org.biojava.nbio.core.sequence.ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute, IProfeatProperties.GROUPING group, IProfeatProperties.DISTRIBUTION distribution)	Computes and return the position with respect to the sequence where the given distribution of the grouping can be found. Example: "1111122222" For the above example, position of the GROUPING.GROUP1 && DISTRIBUTION.FIRST = 0/10 (because the first occurrence of '1' is at position 0) position of the GROUPING.GROUP1 && DISTRIBUTION.ALL = 4/10 (because all occurrences of '1' happens on and before position 4)
static Map<IProfeatProperties.DISTRIBUTION,Double>	ProfeatProperties.getDistributionPosition(String sequence, IProfeatProperties.ATTRIBUTE attribute, IProfeatProperties.GROUPING group)
static double	ProfeatProperties.getDistributionPosition(String sequence, IProfeatProperties.ATTRIBUTE attribute, IProfeatProperties.GROUPING group, IProfeatProperties.DISTRIBUTION distribution)
static Map<IProfeatProperties.DISTRIBUTION,Double>	ProfeatProperties.getDistributionPosition(org.biojava.nbio.core.sequence.ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute, IProfeatProperties.GROUPING group)
static double	ProfeatProperties.getDistributionPosition(org.biojava.nbio.core.sequence.ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute, IProfeatProperties.GROUPING group, IProfeatProperties.DISTRIBUTION distribution)	An adaptor method which computes and return the position with respect to the sequence where the given distribution of the grouping can be found. Example: "1111122222" For the above example, position of the GROUPING.GROUP1 && DISTRIBUTION.FIRST = 0/10 (because the first occurrence of '1' is at position 0) position of the GROUPING.GROUP1 && DISTRIBUTION.ALL = 4/10 (because all occurrences of '1' happens on and before position 4)
Map<IProfeatProperties.DISTRIBUTION,Double>	ProfeatPropertiesImpl.getDistributionPosition(org.biojava.nbio.core.sequence.ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute, IProfeatProperties.GROUPING group)
double	ProfeatPropertiesImpl.getDistributionPosition(org.biojava.nbio.core.sequence.ProteinSequence sequence, IProfeatProperties.ATTRIBUTE attribute, IProfeatProperties.GROUPING group, IProfeatProperties.DISTRIBUTION distribution)