Uses of Class
org.biojava.nbio.alignment.Alignments.PairInProfileScorerType

Packages that use Alignments.PairInProfileScorerType

Package	Description
org.biojava.nbio.alignment
org.biojava.nbio.alignment.template

Uses of Alignments.PairInProfileScorerType in org.biojava.nbio.alignment

Methods in org.biojava.nbio.alignment that return Alignments.PairInProfileScorerType

Modifier and Type	Method and Description
Alignments.PairInProfileScorerType	StandardRescoreRefiner.getPairInProfileScorer()
static Alignments.PairInProfileScorerType	Alignments.PairInProfileScorerType.valueOf(String name) Returns the enum constant of this type with the specified name.
static Alignments.PairInProfileScorerType[]	Alignments.PairInProfileScorerType.values() Returns an array containing the constants of this enum type, in the order they are declared.

Constructors in org.biojava.nbio.alignment with parameters of type Alignments.PairInProfileScorerType

Constructor and Description
StandardRescoreRefiner(Alignments.PairInProfileScorerType pips, Alignments.ProfileProfileAlignerType ppa)

Uses of Alignments.PairInProfileScorerType in org.biojava.nbio.alignment.template

Methods in org.biojava.nbio.alignment.template that return Alignments.PairInProfileScorerType

Modifier and Type	Method and Description
Alignments.PairInProfileScorerType	RescoreRefiner.getPairInProfileScorer() Returns class type of pairwise scoring subroutine.