org.biojava.nbio.alignment.routines

Class AlignerHelper.Anchor

java.lang.Object

org.biojava.nbio.alignment.routines.AlignerHelper.Anchor

Enclosing class:

AlignerHelper

public static class AlignerHelper.Anchor
extends Object

Compounds in query and target sequences that must align

Author:

Daniel Cameron

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	AlignerHelper.Anchor.QueryIndexComparator

Constructor Summary

Constructors

Constructor and Description
AlignerHelper.Anchor(int queryIndex, int targetIndex)

Method Summary

Methods

Modifier and Type	Method and Description
int	getQueryIndex()
int	getTargetIndex()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AlignerHelper.Anchor

public AlignerHelper.Anchor(int queryIndex,
                    int targetIndex)

Method Detail

getQueryIndex

public int getQueryIndex()

getTargetIndex

public int getTargetIndex()