org.biojava.nbio.alignment

Enum Alignments.RefinerType

java.lang.Object

java.lang.Enum<Alignments.RefinerType>

org.biojava.nbio.alignment.Alignments.RefinerType

All Implemented Interfaces:

Serializable, Comparable<Alignments.RefinerType>

Enclosing class:

Alignments

public static enum Alignments.RefinerType
extends Enum<Alignments.RefinerType>

List of implemented profile refinement routines.

Enum Constant Summary

Enum Constants

Enum Constant and Description
PARTITION_SINGLE
PARTITION_SINGLE_ALL
PARTITION_TREE
PARTITION_TREE_ALL
RESCORE_IDENTITIES
RESCORE_SIMILARITIES

Method Summary

Methods

Modifier and Type	Method and Description
static Alignments.RefinerType	valueOf(String name) Returns the enum constant of this type with the specified name.
static Alignments.RefinerType[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

PARTITION_SINGLE

public static final Alignments.RefinerType PARTITION_SINGLE

PARTITION_SINGLE_ALL

public static final Alignments.RefinerType PARTITION_SINGLE_ALL

PARTITION_TREE

public static final Alignments.RefinerType PARTITION_TREE

PARTITION_TREE_ALL

public static final Alignments.RefinerType PARTITION_TREE_ALL

RESCORE_IDENTITIES

public static final Alignments.RefinerType RESCORE_IDENTITIES

RESCORE_SIMILARITIES

public static final Alignments.RefinerType RESCORE_SIMILARITIES

Method Detail

values

public static Alignments.RefinerType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (Alignments.RefinerType c : Alignments.RefinerType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static Alignments.RefinerType valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null