Uses of Class
org.biojava.nbio.alignment.GuideTree

Packages that use GuideTree

Package	Description
org.biojava.nbio.alignment

Uses of GuideTree in org.biojava.nbio.alignment

Methods in org.biojava.nbio.alignment with parameters of type GuideTree

Modifier and Type	Method and Description
static <S extends Sequence<C>,C extends Compound> Profile<S,C>	Alignments.getProgressiveAlignment(GuideTree<S,C> tree, Alignments.ProfileProfileAlignerType type, GapPenalty gapPenalty, SubstitutionMatrix<C> subMatrix) Factory method to run the profile-profile alignments of a progressive multiple sequence alignment concurrently.