CallablePairwiseSequenceAligner (biojava-alignment 5.2.0 API)

java.lang.Object
- org.biojava.nbio.alignment.template.CallablePairwiseSequenceAligner<S,C>

Type Parameters:

S - each Sequence of the alignment pair is of type S

C - each element of an AlignedSequence is a Compound of type C

All Implemented Interfaces:

Callable<org.biojava.nbio.core.alignment.template.SequencePair<S,C>>
```
public class CallablePairwiseSequenceAligner<S extends org.biojava.nbio.core.sequence.template.Sequence<C>,C extends org.biojava.nbio.core.sequence.template.Compound>
extends Object
implements Callable<org.biojava.nbio.core.alignment.template.SequencePair<S,C>>
```
Implements a concurrency wrapper for a PairwiseSequenceAligner.

Author:

Mark Chapman

- Constructor Summary
  
  Constructors
  Constructor Description
  
  CallablePairwiseSequenceAligner(PairwiseSequenceAligner<S,C> psa)
  Creates a pairwise sequence alignment task for simplified parallel execution.
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method Description
  
  org.biojava.nbio.core.alignment.template.SequencePair<S,C> call()
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - CallablePairwiseSequenceAligner
```
public CallablePairwiseSequenceAligner(PairwiseSequenceAligner<S,C> psa)
```
    Creates a pairwise sequence alignment task for simplified parallel execution.
    
    Parameters:
    
    psa - already initialized pairwise sequence aligner
- Method Detail
  - call
```
public org.biojava.nbio.core.alignment.template.SequencePair<S,C> call()
```
    Specified by:
    
    call in interface Callable<S extends org.biojava.nbio.core.sequence.template.Sequence<C>>