CallableProfileProfileAligner (biojava-alignment 5.2.0 API)

java.lang.Object
- org.biojava.nbio.alignment.template.CallableProfileProfileAligner<S,C>

Type Parameters:

S - each Sequence of the Profile pair is of type S

C - each element of an AlignedSequence is a Compound of type C

All Implemented Interfaces:

Callable<org.biojava.nbio.core.alignment.template.ProfilePair<S,C>>
```
public class CallableProfileProfileAligner<S extends org.biojava.nbio.core.sequence.template.Sequence<C>,C extends org.biojava.nbio.core.sequence.template.Compound>
extends Object
implements Callable<org.biojava.nbio.core.alignment.template.ProfilePair<S,C>>
```
Implements a concurrency wrapper for a ProfileProfileAligner.

Author:

Mark Chapman

- Constructor Summary
  
  Constructors
  Constructor Description
  
  CallableProfileProfileAligner(ProfileProfileAligner<S,C> ppa)
  Creates a profile-profile alignment task for simplified parallel execution.
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method Description
  
  org.biojava.nbio.core.alignment.template.ProfilePair<S,C> call()
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - CallableProfileProfileAligner
```
public CallableProfileProfileAligner(ProfileProfileAligner<S,C> ppa)
```
    Creates a profile-profile alignment task for simplified parallel execution.
    
    Parameters:
    
    ppa - already initialized profile-profile aligner
- Method Detail
  - call
```
public org.biojava.nbio.core.alignment.template.ProfilePair<S,C> call()
```
    Specified by:
    
    call in interface Callable<S extends org.biojava.nbio.core.sequence.template.Sequence<C>>