Uses of Interface
org.biojava.nbio.alignment.template.PairInProfileScorer

Packages that use PairInProfileScorer

Package	Description
org.biojava.nbio.alignment

Uses of PairInProfileScorer in org.biojava.nbio.alignment

Classes in org.biojava.nbio.alignment that implement PairInProfileScorer

Modifier and Type	Class	Description
class	FractionalIdentityInProfileScorer<S extends org.biojava.nbio.core.sequence.template.Sequence<C>,C extends org.biojava.nbio.core.sequence.template.Compound>	Implements an algorithm which computes a score for a sequence alignment pair picked from an alignment Profile.
class	FractionalSimilarityInProfileScorer<S extends org.biojava.nbio.core.sequence.template.Sequence<C>,C extends org.biojava.nbio.core.sequence.template.Compound>	Implements an algorithm which computes a score for a sequence alignment pair picked from an alignment Profile.