Uses of Interface org.biojava.nbio.alignment.template.ProfileProfileAligner (biojava-alignment 5.2.0 API)

Packages that use ProfileProfileAligner
Package Description

org.biojava.nbio.alignment

org.biojava.nbio.alignment.template

Uses of ProfileProfileAligner in org.biojava.nbio.alignment

Classes in org.biojava.nbio.alignment that implement ProfileProfileAligner
Modifier and Type	Class	Description
`class`	`SimpleProfileProfileAligner<S extends org.biojava.nbio.core.sequence.template.Sequence<C>,C extends org.biojava.nbio.core.sequence.template.Compound>`	Implements a simple (naive) `Aligner` for a pair of `Profile`s.

Uses of ProfileProfileAligner in org.biojava.nbio.alignment.template

Classes in org.biojava.nbio.alignment.template that implement ProfileProfileAligner
Modifier and Type	Class	Description
`class`	`AbstractProfileProfileAligner<S extends org.biojava.nbio.core.sequence.template.Sequence<C>,C extends org.biojava.nbio.core.sequence.template.Compound>`	Implements common code for an `Aligner` for a pair of `Profile`s.

Constructors in org.biojava.nbio.alignment.template with parameters of type ProfileProfileAligner
Constructor	Description
`CallableProfileProfileAligner(ProfileProfileAligner<S,C> ppa)`	Creates a profile-profile alignment task for simplified parallel execution.