| Comparison |
This class provides static methods for the calculation of the percentage of
identity between two aligned sequences.
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| DistanceMatrixCalculator |
The DistanceMatrixCalculator methods generate a DistanceMatrix from a
MultipleSequenceAlignment or other indirect distance infomation (RMSD).
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| DistanceTreeEvaluator |
Check the accuracy of a Distance Tree by least squares error (LSE) of the
Tree branch lengths and the original Distance Matrix.
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| ForesterWrapper |
This class contains wrapper methods for communication between BioJava and
forester (e.g, Data Structure conversion).
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| TreeConstructor |
The TreeConstructor uses the forester library to build different types of
phylogenetic trees.
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