Package org.biojava.nbio.core.alignment

Class Summary

Class	Description
SimpleAlignedSequence<S extends Sequence<C>,C extends Compound>	Implements a data structure for a Sequence within an alignment.
SimpleProfile<S extends Sequence<C>,C extends Compound>	Implements a data structure for the results of sequence alignment.
SimpleProfilePair<S extends Sequence<C>,C extends Compound>	Implements a data structure for the results of the alignment of a pair of Profiles.
SimpleSequencePair<S extends Sequence<C>,C extends Compound>	Implements a data structure for the results of pairwise sequence alignment.