org.biojava.nbio.core.sequence

Enum DataSource

java.lang.Object

java.lang.Enum<DataSource>

org.biojava.nbio.core.sequence.DataSource

All Implemented Interfaces:

Serializable, Comparable<DataSource>

public enum DataSource
extends Enum<DataSource>

 GenBank                           gi|gi-number|gb|accession|locus
 ENA Data Library                  gi|gi-number|emb|accession|locus
 DDBJ, DNA Database of Japan       gi|gi-number|dbj|accession|locus
 NBRF PIR                          pir||entry
 Protein Research Foundation       prf||name
 SWISS-PROT UNIPROT                sp|accession|name
 Brookhaven Protein Data Bank (1)  pdb|entry|chain
 Brookhaven Protein Data Bank (2)  entry:chain|PDBID|CHAIN|SEQUENCE
 Patents                           pat|country|number
 GenInfo Backbone Id               bbs|number
 General database identifier       gnl|database|identifier
 NCBI Reference Sequence           ref|accession|locus
 Local Sequence identifier         lcl|identifier
 

Author:

Scooter Willis

Enum Constant Summary

Enum Constants

Enum Constant and Description
DDBJ
ENA
GENBANK
GENERAL
GENINFO
LOCAL
NBRF
NCBI
PATENTS
PDB1
PDB2
PDBe
PFAM
PRF
UNIPROT
UNKNOWN

Method Summary

Methods

Modifier and Type	Method and Description
static DataSource	valueOf(String name) Returns the enum constant of this type with the specified name.
static DataSource[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

GENBANK

public static final DataSource GENBANK

ENA

public static final DataSource ENA

DDBJ

public static final DataSource DDBJ

NBRF

public static final DataSource NBRF

PRF

public static final DataSource PRF

PDB1

public static final DataSource PDB1

PDB2

public static final DataSource PDB2

PDBe

public static final DataSource PDBe

PATENTS

public static final DataSource PATENTS

GENINFO

public static final DataSource GENINFO

GENERAL

public static final DataSource GENERAL

NCBI

public static final DataSource NCBI

UNIPROT

public static final DataSource UNIPROT

PFAM

public static final DataSource PFAM

LOCAL

public static final DataSource LOCAL

UNKNOWN

public static final DataSource UNKNOWN

Method Detail

values

public static DataSource[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (DataSource c : DataSource.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static DataSource valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null