Uses of Class
org.biojava.nbio.core.search.io.blast.BlastHspBuilder

Packages that use BlastHspBuilder

Package	Description
org.biojava.nbio.core.search.io.blast

Uses of BlastHspBuilder in org.biojava.nbio.core.search.io.blast

Methods in org.biojava.nbio.core.search.io.blast that return BlastHspBuilder

Modifier and Type	Method and Description
BlastHspBuilder	BlastHspBuilder.setHspAlignLen(int hspAlignLen)
BlastHspBuilder	BlastHspBuilder.setHspBitScore(double hspBitScore)
BlastHspBuilder	BlastHspBuilder.setHspEvalue(double hspEvalue)
BlastHspBuilder	BlastHspBuilder.setHspGaps(int hspGaps)
BlastHspBuilder	BlastHspBuilder.setHspHitFrame(int hspHitFrame)
BlastHspBuilder	BlastHspBuilder.setHspHitFrom(int hspHitFrom)
BlastHspBuilder	BlastHspBuilder.setHspHitTo(int hspHitTo)
BlastHspBuilder	BlastHspBuilder.setHspHseq(java.lang.String hspHseq)
BlastHspBuilder	BlastHspBuilder.setHspIdentity(int hspIdentity)
BlastHspBuilder	BlastHspBuilder.setHspIdentityString(java.lang.String hspIdentityString)
BlastHspBuilder	BlastHspBuilder.setHspNum(int hspNum)
BlastHspBuilder	BlastHspBuilder.setHspPositive(int hspPositive)
BlastHspBuilder	BlastHspBuilder.setHspQseq(java.lang.String hspQseq)
BlastHspBuilder	BlastHspBuilder.setHspQueryFrame(int hspQueryFrame)
BlastHspBuilder	BlastHspBuilder.setHspQueryFrom(int hspQueryFrom)
BlastHspBuilder	BlastHspBuilder.setHspQueryTo(int hspQueryTo)
BlastHspBuilder	BlastHspBuilder.setHspScore(int hspScore)
BlastHspBuilder	BlastHspBuilder.setMismatchCount(java.lang.Integer mismatchCount)
BlastHspBuilder	BlastHspBuilder.setPercentageIdentity(java.lang.Double percentageIdentity)