Uses of Interface
org.biojava.nbio.core.sequence.io.template.FastaHeaderFormatInterface

Packages that use FastaHeaderFormatInterface

Package	Description
org.biojava.nbio.core.sequence.io

Uses of FastaHeaderFormatInterface in org.biojava.nbio.core.sequence.io

Classes in org.biojava.nbio.core.sequence.io that implement FastaHeaderFormatInterface

Modifier and Type	Class and Description
class	GenericFastaHeaderFormat<S extends AbstractSequence<?>,C extends Compound> We store the original header if the sequence is parsed from a fasta file and will use that exact sequence if we write out the sequences to a fasta file.

Constructors in org.biojava.nbio.core.sequence.io with parameters of type FastaHeaderFormatInterface

Constructor and Description
FastaGeneWriter(java.io.OutputStream os, java.util.Collection<GeneSequence> sequences, FastaHeaderFormatInterface<GeneSequence,NucleotideCompound> headerFormat, boolean showExonUppercase)
FastaGeneWriter(java.io.OutputStream os, java.util.Collection<GeneSequence> sequences, FastaHeaderFormatInterface<GeneSequence,NucleotideCompound> headerFormat, boolean showExonUppercase, int lineLength)
FastaWriter(java.io.OutputStream os, java.util.Collection<S> sequences, FastaHeaderFormatInterface<S,C> headerFormat) Use default line length of 60
FastaWriter(java.io.OutputStream os, java.util.Collection<S> sequences, FastaHeaderFormatInterface<S,C> headerFormat, int lineLength) Set custom lineLength