org.biojava.nbio.genome.parsers.genename

Class GeneName

java.lang.Object

org.biojava.nbio.genome.parsers.genename.GeneName

All Implemented Interfaces:

Serializable, Comparable<GeneName>

public class GeneName
extends Object
implements Serializable, Comparable<GeneName>

A simple bean that contains gene name information as available from www.genenames.org

Author:

Andreas Prlic

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
GeneName()

Method Summary

Methods

Modifier and Type	Method and Description
int	compareTo(GeneName o)
boolean	equals(GeneName o)
String	getAccessionNr()
String	getApprovedName()
String	getApprovedSymbol()
String	getChromosome()
String	getEnsemblGeneId()
String	getHgncId()
String	getOmimId()
String	getPreviousNames()
String	getPreviousSymbols()
String	getRefseqIds()
String	getStatus()
String	getSynonyms()
String	getUniprot()
void	setAccessionNr(String accessionNr)
void	setApprovedName(String approvedName)
void	setApprovedSymbol(String approvedSymbol)
void	setChromosome(String chromosome)
void	setEnsemblGeneId(String ensemblGeneId)
void	setHgncId(String hgncId)
void	setOmimId(String omimId)
void	setPreviousNames(String previousNames)
void	setPreviousSymbols(String previousSymbols)
void	setRefseqIds(String refseqIds)
void	setStatus(String status)
void	setSynonyms(String synonyms)
void	setUniprot(String uniprot)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

GeneName

public GeneName()

Method Detail

getHgncId

public String getHgncId()

setHgncId

public void setHgncId(String hgncId)

getApprovedSymbol

public String getApprovedSymbol()

setApprovedSymbol

public void setApprovedSymbol(String approvedSymbol)

getApprovedName

public String getApprovedName()

setApprovedName

public void setApprovedName(String approvedName)

getStatus

public String getStatus()

setStatus

public void setStatus(String status)

getPreviousSymbols

public String getPreviousSymbols()

setPreviousSymbols

public void setPreviousSymbols(String previousSymbols)

getPreviousNames

public String getPreviousNames()

setPreviousNames

public void setPreviousNames(String previousNames)

getSynonyms

public String getSynonyms()

setSynonyms

public void setSynonyms(String synonyms)

getChromosome

public String getChromosome()

setChromosome

public void setChromosome(String chromosome)

getAccessionNr

public String getAccessionNr()

setAccessionNr

public void setAccessionNr(String accessionNr)

getRefseqIds

public String getRefseqIds()

setRefseqIds

public void setRefseqIds(String refseqIds)

getUniprot

public String getUniprot()

setUniprot

public void setUniprot(String uniprot)

getEnsemblGeneId

public String getEnsemblGeneId()

setEnsemblGeneId

public void setEnsemblGeneId(String ensemblGeneId)

getOmimId

public String getOmimId()

setOmimId

public void setOmimId(String omimId)

compareTo

public int compareTo(GeneName o)

Specified by:

compareTo in interface Comparable<GeneName>

equals

public boolean equals(GeneName o)

toString

public String toString()

Overrides:

toString in class Object