org.biojava.nbio.genome.query

Class BlastXMLQuery

java.lang.Object

org.biojava.nbio.genome.query.BlastXMLQuery

public class BlastXMLQuery
extends Object

Author:

Scooter Willis

Constructor Summary

Constructors

Constructor and Description
BlastXMLQuery(String blastFile)

Method Summary

Methods

Modifier and Type	Method and Description
LinkedHashMap<String,ArrayList<String>>	getHitsQueryDef(double maxEScore)
static void	main(String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BlastXMLQuery

public BlastXMLQuery(String blastFile)
              throws Exception

Throws:

Exception

Method Detail

getHitsQueryDef

public LinkedHashMap<String,ArrayList<String>> getHitsQueryDef(double maxEScore)
                                                        throws Exception

Throws:

Exception

main

public static void main(String[] args)