org.biojava.nbio.genome.uniprot

Class UniprotToFasta

java.lang.Object

org.biojava.nbio.genome.uniprot.UniprotToFasta

public class UniprotToFasta
extends Object

Author:

Scooter

Constructor Summary

Constructors

Constructor and Description
UniprotToFasta()

Method Summary

Methods

Modifier and Type	Method and Description
static void	main(String[] args)
void	process(String uniprotDatFileName, String fastaFileName) Convert a Uniprot sequence file to a fasta file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

UniprotToFasta

public UniprotToFasta()

Method Detail

main

public static void main(String[] args)

process

public void process(String uniprotDatFileName,
           String fastaFileName)
             throws Exception

Convert a Uniprot sequence file to a fasta file. Allows you to download all sequence data for a species and convert to fasta to be used in a blast database

Parameters:

uniprotDatFileName -

fastaFileName -

Throws:

Exception