Constant Field Values

Contents

• org.biojava.*

org.biojava.*

org.biojava.nbio.genome.parsers.cytoband.CytobandParser

Modifier and Type	Constant Field	Value
public static final String	DEFAULT_LOCATION	"http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/cytoBand.txt.gz"

org.biojava.nbio.genome.parsers.genename.GeneChromosomePositionParser

Modifier and Type	Constant Field	Value
public static final String	DEFAULT_MAPPING_URL	"http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refFlat.txt.gz"

org.biojava.nbio.genome.parsers.genename.GeneNamesParser

Modifier and Type	Constant Field	Value
public static final String	DEFAULT_GENENAMES_URL	"http://www.genenames.org/cgi-bin/download?title=HGNC+output+data&hgnc_dbtag=on&col=gd_app_sym&col=gd_app_name&col=gd_status&col=gd_prev_sym&col=gd_prev_name&col=gd_aliases&col=gd_pub_chrom_map&col=gd_pub_acc_ids&col=md_mim_id&col=gd_pub_refseq_ids&col=md_ensembl_id&col=md_prot_id&col=gd_hgnc_id&status=Approved&status_opt=2&where=((gd_pub_chrom_map%20not%20like%20%27%patch%%27%20and%20gd_pub_chrom_map%20not%20like%20%27%ALT_REF%%27)%20or%20gd_pub_chrom_map%20IS%20NULL)%20and%20gd_locus_group%20%3d%20%27protein-coding%20gene%27&order_by=gd_app_sym_sort&format=text&limit=&submit=submit&.cgifields=&.cgifields=chr&.cgifields=status&.cgifields=hgnc_dbtag"