Package org.biojava.nbio.genome.parsers.geneid

Class GeneIDXMLReader

java.lang.Object

org.biojava.nbio.genome.parsers.geneid.GeneIDXMLReader

public class GeneIDXMLReader
extends Object

Author:

Scooter Willis

Constructor Summary

Constructors

Constructor	Description
GeneIDXMLReader(String geneidXMLFile)

Method Summary

Modifier and Type	Method	Description
LinkedHashMap<String,org.biojava.nbio.core.sequence.DNASequence>	getDNACodingSequences()
LinkedHashMap<String,org.biojava.nbio.core.sequence.ProteinSequence>	getProteinSequences()
static void	main(String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GeneIDXMLReader

public GeneIDXMLReader(String geneidXMLFile)
                throws Exception

Throws:

Exception

Method Detail

getProteinSequences

public LinkedHashMap<String,org.biojava.nbio.core.sequence.ProteinSequence> getProteinSequences()
                                                                                               throws Exception

Throws:

Exception

getDNACodingSequences

public LinkedHashMap<String,org.biojava.nbio.core.sequence.DNASequence> getDNACodingSequences()
                                                                                             throws Exception

Throws:

Exception

main

public static void main(String[] args)