UniprotToFasta (biojava-genome 5.2.0 API)

java.lang.Object
- org.biojava.nbio.genome.uniprot.UniprotToFasta

public class UniprotToFasta
extends Object

Author:: Scooter

Constructor Summary

Constructors
Constructor Description

UniprotToFasta()

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`static void`	`main(String[] args)`
`void`	`process(String uniprotDatFileName, String fastaFileName)`	Convert a Uniprot sequence file to a fasta file.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - UniprotToFasta
```
public UniprotToFasta()
```
- Method Detail
  - main
```
public static void main(String[] args)
```
  - process
```
public void process(String uniprotDatFileName,
                    String fastaFileName)
             throws Exception
```
    Convert a Uniprot sequence file to a fasta file. Allows you to download all sequence data for a species and convert to fasta to be used in a blast database
    
    Parameters:
    
    uniprotDatFileName -
    
    fastaFileName -
    
    Throws:
    
    Exception