Package org.biojava.nbio.genome.util

Class ProteinMappingTools

java.lang.Object

org.biojava.nbio.genome.util.ProteinMappingTools

public class ProteinMappingTools
extends Object

Constructor Summary

Constructors

Constructor	Description
ProteinMappingTools()

Method Summary

Modifier and Type	Method	Description
static org.biojava.nbio.core.sequence.ProteinSequence	convertDNAtoProteinSequence(String dnaSequence)	Converts the DNA sequence to protein sequence.
static org.biojava.nbio.core.sequence.ProteinSequence	convertDNAtoProteinSequence(org.biojava.nbio.core.sequence.DNASequence dnaSequence)	Converts the DNA sequence to protein sequence.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProteinMappingTools

public ProteinMappingTools()

Method Detail

convertDNAtoProteinSequence

public static org.biojava.nbio.core.sequence.ProteinSequence convertDNAtoProteinSequence(String dnaSequence)
                                                                                  throws org.biojava.nbio.core.exceptions.CompoundNotFoundException

Converts the DNA sequence to protein sequence.

Parameters:

dnaSequence - the DNA sequence

Returns:

the protein sequence

Throws:

org.biojava.nbio.core.exceptions.CompoundNotFoundException

convertDNAtoProteinSequence

public static org.biojava.nbio.core.sequence.ProteinSequence convertDNAtoProteinSequence(org.biojava.nbio.core.sequence.DNASequence dnaSequence)
                                                                                  throws org.biojava.nbio.core.exceptions.CompoundNotFoundException

Converts the DNA sequence to protein sequence.

Parameters:

dnaSequence - the DNA sequence

Returns:

the protein sequence

Throws:

org.biojava.nbio.core.exceptions.CompoundNotFoundException