Uses of Class
org.biojava.nbio.genome.parsers.twobit.TwoBitFacade

Packages that use TwoBitFacade

Package	Description
org.biojava.nbio.genome.util

Uses of TwoBitFacade in org.biojava.nbio.genome.util

Methods in org.biojava.nbio.genome.util with parameters of type TwoBitFacade

Modifier and Type	Method and Description
static DNASequence	ChromosomeMappingTools.getTranscriptDNASequence(TwoBitFacade twoBitFacade, GeneChromosomePosition gcp) Extracts the DNA sequence transcribed from the input genetic coordinates.
static DNASequence	ChromosomeMappingTools.getTranscriptDNASequence(TwoBitFacade twoBitFacade, java.lang.String chromosome, java.util.List<java.lang.Integer> exonStarts, java.util.List<java.lang.Integer> exonEnds, int cdsStart, int cdsEnd, java.lang.Character orientation) Extracts the DNA sequence transcribed from the input genetic coordinates.