Uses of Class
org.biojava.nbio.protmod.structure.StructureGroup

Packages that use StructureGroup

Package	Description
org.biojava.nbio.protmod.io
org.biojava.nbio.protmod.structure

Uses of StructureGroup in org.biojava.nbio.protmod.io

Methods in org.biojava.nbio.protmod.io that return StructureGroup

Modifier and Type	Method and Description
static StructureGroup	StructureGroupXMLConverter.fromXML(Node n)

Methods in org.biojava.nbio.protmod.io with parameters of type StructureGroup

Modifier and Type	Method and Description
static void	StructureGroupXMLConverter.toXML(StructureGroup group, org.biojava.nbio.core.util.PrettyXMLWriter xml)

Uses of StructureGroup in org.biojava.nbio.protmod.structure

Methods in org.biojava.nbio.protmod.structure that return StructureGroup

Modifier and Type	Method and Description
StructureGroup	StructureAtom.getGroup()
static StructureGroup	StructureUtil.getStructureGroup(Group group, boolean isAminoAcid)

Methods in org.biojava.nbio.protmod.structure that return types with arguments of type StructureGroup

Modifier and Type	Method and Description
Set<StructureGroup>	ModifiedCompoundImpl.getGroups()
Set<StructureGroup>	ModifiedCompound.getGroups()
Set<StructureGroup>	ModifiedCompoundImpl.getGroups(boolean isAminoAcid)
Set<StructureGroup>	ModifiedCompound.getGroups(boolean isAminoAcid)
Set<StructureGroup>	ProteinModificationIdentifier.getUnidentifiableModifiedResidues()

Methods in org.biojava.nbio.protmod.structure with parameters of type StructureGroup

Modifier and Type	Method and Description
int	StructureGroup.compareTo(StructureGroup aGroup)

Method parameters in org.biojava.nbio.protmod.structure with type arguments of type StructureGroup

Modifier and Type	Method and Description
void	ModifiedCompoundImpl.setGroups(Set<StructureGroup> groups)
void	ModifiedCompound.setGroups(Set<StructureGroup> groups)

Constructors in org.biojava.nbio.protmod.structure with parameters of type StructureGroup

Constructor and Description
ModifiedCompoundImpl(ProteinModification modification, StructureGroup modifiedResidue) Create a ModifiedCompoundImpl that has only one involved component.
StructureAtom(StructureGroup group, String atomName)