Uses of Class
org.biojava.nbio.protmod.Component

Packages that use Component

Package	Description
org.biojava.nbio.protmod
org.biojava.nbio.protmod.io

Uses of Component in org.biojava.nbio.protmod

Methods in org.biojava.nbio.protmod that return Component

Modifier and Type	Method and Description
Component	ModificationLinkage.getComponent1()
Component	ModificationLinkage.getComponent2()
static Component	Component.of(java.util.Set<java.lang.String> pdbccIds) Get a Component that does not have to occur at terminals.
static Component	Component.of(java.util.Set<java.lang.String> pdbccIds, boolean isNTerminal, boolean isCTerminal) Get or create a Component.
static Component	Component.of(java.lang.String pdbccId) Get a Component that does not have to occur at terminals.
static Component	Component.of(java.lang.String pdbccId, boolean isNTerminal, boolean isCTerminal) Get or create a Component.

Methods in org.biojava.nbio.protmod that return types with arguments of type Component

Modifier and Type	Method and Description
static java.util.Set<Component>	ProteinModificationRegistry.allComponents()
static java.util.Set<Component>	Component.allComponents()
java.util.List<Component>	ModificationCondition.getComponents()
java.util.List<Component>	ModificationConditionImpl.getComponents() }

Methods in org.biojava.nbio.protmod with parameters of type Component

Modifier and Type	Method and Description
static java.util.Set<ProteinModification>	ProteinModificationRegistry.getByComponent(Component comp1, Component... comps) Get ProteinModifications that involves one or more components.
static java.util.Set<ProteinModification>	ProteinModificationRegistry.getByComponent(Component comp1, Component... comps) Get ProteinModifications that involves one or more components.

Constructor parameters in org.biojava.nbio.protmod with type arguments of type Component

Constructor and Description
ModificationConditionImpl(java.util.List<Component> components, java.util.List<ModificationLinkage> linkages)
ModificationLinkage(java.util.List<Component> components, int indexOfComponent1, int indexOfComponent2)
ModificationLinkage(java.util.List<Component> components, int indexOfComponent1, java.util.List<java.lang.String> pdbNameOfPotentialAtomsOnComponent1, int indexOfComponent2, java.util.List<java.lang.String> pdbNameOfPotentialAtomsOnComponent2)
ModificationLinkage(java.util.List<Component> components, int indexOfComponent1, java.util.List<java.lang.String> pdbNameOfPotentialAtomsOnComponent1, java.lang.String labelOfAtomOnComponent1, int indexOfComponent2, java.util.List<java.lang.String> pdbNameOfPotentialAtomsOnComponent2, java.lang.String labelOfAtomOnComponent2)
ModificationLinkage(java.util.List<Component> components, int indexOfComponent1, java.lang.String pdbNameOfAtomsOnComponent1, int indexOfComponent2, java.lang.String pdbNameOfAtomsOnComponent2)

Uses of Component in org.biojava.nbio.protmod.io

Methods in org.biojava.nbio.protmod.io that return Component

Modifier and Type	Method and Description
static Component	ComponentXMLConverter.fromXML(org.w3c.dom.Node componentN)
static Component	ComponentXMLConverter.fromXML(java.lang.String xml)

Methods in org.biojava.nbio.protmod.io with parameters of type Component

Modifier and Type	Method and Description
static java.lang.String	ComponentXMLConverter.toXML(Component component)
static void	ComponentXMLConverter.toXML(Component component, PrettyXMLWriter xml)