Uses of Class
org.biojava.nbio.protmod.ProteinModificationImpl.Builder

Packages that use ProteinModificationImpl.Builder

Package	Description
org.biojava.nbio.protmod

Uses of ProteinModificationImpl.Builder in org.biojava.nbio.protmod

Methods in org.biojava.nbio.protmod that return ProteinModificationImpl.Builder

Modifier and Type	Method and Description
ProteinModificationImpl.Builder	ProteinModificationImpl.Builder.addKeyword(java.lang.String keyword) Add a keyword associate with the PTM.
ProteinModificationImpl.Builder	ProteinModificationImpl.Builder.addKeywords(java.util.Collection<java.lang.String> keywords)
ProteinModificationImpl.Builder	ProteinModificationImpl.Builder.setCategory(ModificationCategory cat)
ProteinModificationImpl.Builder	ProteinModificationImpl.Builder.setCondition(ModificationCondition condition)
ProteinModificationImpl.Builder	ProteinModificationImpl.Builder.setDescription(java.lang.String description)
ProteinModificationImpl.Builder	ProteinModificationImpl.Builder.setFormula(java.lang.String formula) Set the residue formula.
ProteinModificationImpl.Builder	ProteinModificationImpl.Builder.setOccurrenceType(ModificationOccurrenceType occType)
ProteinModificationImpl.Builder	ProteinModificationImpl.Builder.setPdbccId(java.lang.String pdbccId) Set the Protein Data Bank Chemical Component ID.
ProteinModificationImpl.Builder	ProteinModificationImpl.Builder.setPdbccName(java.lang.String pdbccName) Set the Protein Data Bank Chemical Component name.
ProteinModificationImpl.Builder	ProteinModificationImpl.Builder.setPsimodId(java.lang.String psimodId) Set the PSI-MOD ID.
ProteinModificationImpl.Builder	ProteinModificationImpl.Builder.setPsimodName(java.lang.String psimodName) Set the PSI-MOD name.
ProteinModificationImpl.Builder	ProteinModificationImpl.Builder.setResidId(java.lang.String residId) Set the RESID ID.
ProteinModificationImpl.Builder	ProteinModificationImpl.Builder.setResidName(java.lang.String residName) Set the RESID name.
ProteinModificationImpl.Builder	ProteinModificationImpl.Builder.setSystematicName(java.lang.String sysName) Set the systematic name.