Package demo

Class CountContacts

  • public class CountContacts
extends java.lang.Object
    An example reading the PDB and finding the mean C-alpha to C-alpha distance between Proline and Lysine.
    Author:
    Anthony Bradley

    • Constructor Summary

      Constructors 
      Constructor Description
      CountContacts()  

    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static void findCalphaCalphaContacts()
      Example of finding C-alpha C-alpha contacts.
      static void findFeHisContacts()
      Example of finding Fe His contacts.
      static void findNOChargedContacts()
      Example of finding N O charged contacts.
      static void main​(java.lang.String[] args)
      An example reading the PDB and finding the mean C-alpha to C-alpha distance between Proline and Lysine.

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • CountContacts

        public CountContacts()

    • Method Detail

      • main

        public static void main​(java.lang.String[] args)
        An example reading the PDB and finding the mean C-alpha to C-alpha distance between Proline and Lysine.
        Parameters:
        args -

      • findCalphaCalphaContacts

        public static void findCalphaCalphaContacts()
        Example of finding C-alpha C-alpha contacts.

      • findNOChargedContacts

        public static void findNOChargedContacts()
        Example of finding N O charged contacts.

      • findFeHisContacts

        public static void findFeHisContacts()
        Example of finding Fe His contacts.