Uses of Class
org.biojava.spark.data.AtomContactRDD

Packages that use AtomContactRDD

Package	Description
org.biojava.spark.data
org.biojava.spark.utils

Uses of AtomContactRDD in org.biojava.spark.data

Methods in org.biojava.spark.data that return AtomContactRDD

Modifier and Type	Method	Description
AtomContactRDD	AtomContactRDD.filterDistance(double cutoff)	Filter all contacts greater than a certain distance.
AtomContactRDD	AtomContactRDD.filterElementElementContacts(java.lang.String elementNameOne, java.lang.String elementNameTwo)	Filter an AtomContactRDD based on two elements being in contact.
AtomContactRDD	AtomContactRDD.filterElementGroupContacts(java.lang.String groupName, java.lang.String elementName)	Filter an AtomContactRDD based on two elements being in contact.

Uses of AtomContactRDD in org.biojava.spark.utils

Methods in org.biojava.spark.utils that return AtomContactRDD

Modifier and Type	Method	Description
static AtomContactRDD	BiojavaSparkUtils.findContacts(org.rcsb.mmtf.spark.data.StructureDataRDD structureDataRDD, double cutoff)	Find the contacts for each structure in the PDB.
static AtomContactRDD	BiojavaSparkUtils.findContacts(org.rcsb.mmtf.spark.data.StructureDataRDD structureDataRDD, org.rcsb.mmtf.spark.data.AtomSelectObject selectObjectOne, double cutoff)	Find the contacts for each structure in the PDB.
static AtomContactRDD	BiojavaSparkUtils.findContacts(org.rcsb.mmtf.spark.data.StructureDataRDD structureDataRDD, org.rcsb.mmtf.spark.data.AtomSelectObject selectObjectOne, org.rcsb.mmtf.spark.data.AtomSelectObject selectObjectTwo, double cutoff)	Find the contacts for each structure in the PDB.