Serialized Form

Package org.biojava.spark.data

Class org.biojava.spark.data.AtomContactRDD extends java.lang.Object implements Serializable

serialVersionUID:

-1589566070085057826L

Serialized Fields

atomContactRdd

org.apache.spark.api.java.JavaRDD<org.biojava.nbio.structure.contact.AtomContact> atomContactRdd

The private JavaRDD of AtomContact

Package org.biojava.spark.function

Class org.biojava.spark.function.AlignmentTools extends java.lang.Object implements Serializable

serialVersionUID:

1L

Class org.biojava.spark.function.BuildUndirectedGraph extends java.lang.Object implements Serializable

serialVersionUID:

-5430001015032969460L

Serialized Fields

graph

org.jgrapht.Graph graph

Class org.biojava.spark.function.FlatMapCluster extends java.lang.Object implements Serializable

Class org.biojava.spark.function.GetSubsetOfSequences extends java.lang.Object implements Serializable

Serialized Fields

requestedIds

org.apache.spark.broadcast.Broadcast<java.util.List<java.lang.String>> requestedIds

Class org.biojava.spark.function.PairwiseSequenceComparison extends java.lang.Object implements Serializable

Class org.biojava.spark.function.PrintClusterInfo extends java.lang.Object implements Serializable

Serialized Fields

clusters

java.util.List<scala.Tuple2<java.lang.String,java.lang.Iterable<java.lang.String>>> clusters

Class org.biojava.spark.function.RandomKeyAssigner extends java.lang.Object implements Serializable

Serialized Fields

nrFractions

int nrFractions

Package org.biojava.spark.graph

Class org.biojava.spark.graph.ShowGraph.MyEdge extends org.jgrapht.graph.DefaultWeightedEdge implements Serializable

serialVersionUID:

-2329441316446644067L

Package org.biojava.spark.mappers

Class org.biojava.spark.mappers.CalculateContacts extends java.lang.Object implements Serializable

serialVersionUID:

7102351722106317536L

Serialized Fields

cutoff

double cutoff

fast

boolean fast

selectObjectOne

org.rcsb.mmtf.spark.data.AtomSelectObject selectObjectOne

selectObjectTwo

org.rcsb.mmtf.spark.data.AtomSelectObject selectObjectTwo

Class org.biojava.spark.mappers.CalculateFrequency extends java.lang.Object implements Serializable

serialVersionUID:

6829051271366307056L

Serialized Fields

selectObject

org.rcsb.mmtf.spark.data.AtomSelectObject selectObject

Class org.biojava.spark.mappers.MapperUtils extends java.lang.Object implements Serializable

serialVersionUID:

-4717807367698811030L

Class org.biojava.spark.mappers.PairwiseSequenceComparison extends java.lang.Object implements Serializable

serialVersionUID:

8962410797026956531L

Serialized Fields

minOverlap

float minOverlap

minPercid

float minPercid

sequences

java.util.List<scala.Tuple2<java.lang.String,java.lang.String>> sequences

Class org.biojava.spark.mappers.PdbIdToMmtf extends java.lang.Object implements Serializable

serialVersionUID:

786599975302506694L

Serialized Fields

producer

java.lang.String producer

Class org.biojava.spark.mappers.StringByteToTextByteWriter extends java.lang.Object implements Serializable

serialVersionUID:

8149053011560186912L