Package org.biojava.nbio.structure.align.gui

Class AlignmentCalcDB

java.lang.Object

org.biojava.nbio.structure.align.gui.AlignmentCalcDB

All Implemented Interfaces:

Runnable, AlignmentCalculationRunnable

public class AlignmentCalcDB
extends Object
implements AlignmentCalculationRunnable

Field Summary

Fields

Modifier and Type	Field	Description
static String	SCOP_VERSION

Constructor Summary

Constructors

Constructor	Description
AlignmentCalcDB(AlignmentGui parent, org.biojava.nbio.structure.Structure s1, String name1, org.biojava.nbio.structure.align.util.UserConfiguration config, String outFile, Boolean domainSplit)

Method Summary

Modifier and Type	Method	Description
void	cleanup()
org.biojava.nbio.structure.align.StructureAlignment	getAlgorithm()
void	interrupt()	stops what is currently happening and does not continue
boolean	isInterrupted()
void	run()
void	setAlgorithm(org.biojava.nbio.structure.align.StructureAlignment algo)
void	setNrCPUs(int useNrCPUs)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

SCOP_VERSION

public static String SCOP_VERSION

Constructor Detail

AlignmentCalcDB

public AlignmentCalcDB(AlignmentGui parent,
                       org.biojava.nbio.structure.Structure s1,
                       String name1,
                       org.biojava.nbio.structure.align.util.UserConfiguration config,
                       String outFile,
                       Boolean domainSplit)

Method Detail

getAlgorithm

public org.biojava.nbio.structure.align.StructureAlignment getAlgorithm()

setAlgorithm

public void setAlgorithm(org.biojava.nbio.structure.align.StructureAlignment algo)

run

public void run()

Specified by:

run in interface Runnable

interrupt

public void interrupt()

stops what is currently happening and does not continue

Specified by:

interrupt in interface AlignmentCalculationRunnable

cleanup

public void cleanup()

Specified by:

cleanup in interface AlignmentCalculationRunnable

setNrCPUs

public void setNrCPUs(int useNrCPUs)

Specified by:

setNrCPUs in interface AlignmentCalculationRunnable

isInterrupted

public boolean isInterrupted()