MultipleAlignmentCalc (biojava-structure-gui 5.2.0 API)

java.lang.Object
- org.biojava.nbio.structure.align.gui.MultipleAlignmentCalc

All Implemented Interfaces:

Runnable, AlignmentCalculationRunnable
```
public class MultipleAlignmentCalc
extends Object
implements AlignmentCalculationRunnable
```
A class that obtains structures via DAS and aligns them. This is done in a separate thread. It is possible to register Event listeners to get notification of when the download has finished.

Since:

4.2.0

Author:

Aleix Lafita

Constructor Summary

Constructors
Constructor	Description
`MultipleAlignmentCalc(MultipleAlignmentGUI parent, List<org.biojava.nbio.structure.Structure> structures, List<org.biojava.nbio.structure.StructureIdentifier> names)`	Requests an alignment of the pdbs.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method Description

void cleanup()

void interrupt()

void run()

void setNrCPUs(int useNrCPUs)
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - MultipleAlignmentCalc
```
public MultipleAlignmentCalc(MultipleAlignmentGUI parent,
                             List<org.biojava.nbio.structure.Structure> structures,
                             List<org.biojava.nbio.structure.StructureIdentifier> names)
```
    Requests an alignment of the pdbs. If they are empty strings, they are ignored.
    
    Parameters:
    
    parent - the gui frame that interacts with this class
    
    structures -
    
    names -
- Method Detail
  - run
```
public void run()
```
    Specified by:
    
    run in interface Runnable
  - interrupt
```
public void interrupt()
```
    Specified by:
    
    interrupt in interface AlignmentCalculationRunnable
  - cleanup
```
public void cleanup()
```
    Specified by:
    
    cleanup in interface AlignmentCalculationRunnable
  - setNrCPUs
```
public void setNrCPUs(int useNrCPUs)
```
    Specified by:
    
    setNrCPUs in interface AlignmentCalculationRunnable