Package org.biojava.nbio.structure.symmetry.jmolScript

Class JmolSymmetryScriptGeneratorI

java.lang.Object

org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGenerator

org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorPointGroup

org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorI

public class JmolSymmetryScriptGeneratorI
extends JmolSymmetryScriptGeneratorPointGroup

Author:

Peter

Constructor Summary

Constructors

Constructor	Description
JmolSymmetryScriptGeneratorI(org.biojava.nbio.structure.symmetry.axis.RotationAxisAligner axisTransformation, String name)

Method Summary

Modifier and Type	Method	Description
int	getZoom()	Returns the Jmol zoom to fit polyhedron and symmetry axes.

Methods inherited from class org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorPointGroup

colorBySequenceCluster, colorBySubunit, colorBySymmetry, drawAxes, drawPolyhedron, getAxisTransformation, getDefaultOrientation, getMaxExtension, getMeanExtension, getOrientation, getOrientationCount, getOrientationName, getOrientationWithZoom, getPolyhedron, getRotationGroup, getTransformation, hideAxes, hidePolyhedron, playOrientations, setAxisTransformation, setDefaultColoring, setOnTheFly, setPolyhedron, setRotationGroup, showAxes, showPolyhedron

Methods inherited from class org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGenerator

f1Dot2, fDot2, getInstance, getInstantaneousOrientation, getJmolColor, getJmolColorScript, getJmolLigandScript, getJmolPoint, jMolFloat

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

JmolSymmetryScriptGeneratorI

public JmolSymmetryScriptGeneratorI(org.biojava.nbio.structure.symmetry.axis.RotationAxisAligner axisTransformation,
                                    String name)

Method Detail

getZoom

public int getZoom()

Description copied from class: JmolSymmetryScriptGenerator

Returns the Jmol zoom to fit polyhedron and symmetry axes. This zoom level should be used so that the polyhedron and symmetry axes are not cutoff.

Specified by:

getZoom in class JmolSymmetryScriptGeneratorPointGroup

Returns: