org.biojava.nbio.structure.align

Class CallableStructureAlignment

java.lang.Object

org.biojava.nbio.structure.align.CallableStructureAlignment

All Implemented Interfaces:

Callable<AFPChain>

public class CallableStructureAlignment
extends Object
implements Callable<AFPChain>

Constructor Summary

Constructors

Constructor and Description
CallableStructureAlignment()

Method Summary

Methods

Modifier and Type	Method and Description
AFPChain	call()
Atom[]	getCa1()
AtomCache	getCache()
SynchronizedOutFile	getOutFile()
PdbPair	getPair()
void	setAlgorithmName(String algorithmName)
void	setCa1(Atom[] ca1)
void	setCache(AtomCache cache)
void	setOutFile(SynchronizedOutFile outFile)
void	setOutputDir(File outFileF)
void	setPair(PdbPair pair)
void	setParameters(ConfigStrucAligParams parameters)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CallableStructureAlignment

public CallableStructureAlignment()

Method Detail

call

public AFPChain call()
              throws Exception

Specified by:

call in interface Callable<AFPChain>

Throws:

Exception

getPair

public PdbPair getPair()

setPair

public void setPair(PdbPair pair)

getCache

public AtomCache getCache()

setCache

public void setCache(AtomCache cache)

getOutFile

public SynchronizedOutFile getOutFile()

setOutFile

public void setOutFile(SynchronizedOutFile outFile)

getCa1

public Atom[] getCa1()

setCa1

public void setCa1(Atom[] ca1)

setOutputDir

public void setOutputDir(File outFileF)

setAlgorithmName

public void setAlgorithmName(String algorithmName)

setParameters

public void setParameters(ConfigStrucAligParams parameters)