public class BondMaker
extends Object
Adds polymer bonds for peptides and nucleotides based on distance cutoffs and
intra-group (residue) bonds based on data from the Chemical Component Dictionary
to the Structure object.
TODO the current implementation adds bonds to the first model only. This
should be sufficient for homogeneous models, but here are a few inhomogeneous models
in the PDB. A better handling of models should be considered in the future.
- Author:
- Peter Rose, Ulysse Carion