org.biojava.nbio.structure

Class SSBond

java.lang.Object

org.biojava.nbio.structure.SSBond

All Implemented Interfaces:

Serializable, Cloneable, PDBRecord

public class SSBond
extends Object
implements PDBRecord, Serializable, Cloneable

A simple bean to store disulfid bridge information, the SSBOND records in the PDB files. The two residues specified here are CYS residues that form a Disulfid bridge.

Author:

Andreas Prlic

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
SSBond()

Method Summary

Methods

Modifier and Type	Method and Description
SSBond	clone()
String	getChainID1()
String	getChainID2()
String	getInsCode1()
String	getInsCode2()
String	getResnum1() get residue number for first CYS.
String	getResnum2() get residue number for second CYS.
int	getSerNum() set serial number of this SSBOND in PDB file
void	setChainID1(String chainID1)
void	setChainID2(String chainID2)
void	setInsCode1(String insCode1)
void	setInsCode2(String insCode2)
void	setResnum1(String resnum1)
void	setResnum2(String resnum2)
void	setSerNum(int serNum) get serial number of this SSBOND in PDB file
String	toPDB() Returns a PDB file like representation of this record.
void	toPDB(StringBuffer buf) append the PDB representation of this SSBOND to the provided StringBUffer
String	toString()

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SSBond

public SSBond()

Method Detail

toPDB

public String toPDB()

Description copied from interface: PDBRecord

Returns a PDB file like representation of this record.

Specified by:

toPDB in interface PDBRecord

Returns:

a String providing a PDB file like representation of the record.

toPDB

public void toPDB(StringBuffer buf)

append the PDB representation of this SSBOND to the provided StringBUffer

Specified by:

toPDB in interface PDBRecord

Parameters:

buf - a StringBuffer to print the PDB representation to

getInsCode1

public String getInsCode1()

setInsCode1

public void setInsCode1(String insCode1)

getInsCode2

public String getInsCode2()

setInsCode2

public void setInsCode2(String insCode2)

getSerNum

public int getSerNum()

set serial number of this SSBOND in PDB file

Returns:

the serial number

setSerNum

public void setSerNum(int serNum)

get serial number of this SSBOND in PDB file

Parameters:

serNum -

clone

public SSBond clone()

Overrides:

clone in class Object

getChainID1

public String getChainID1()

setChainID1

public void setChainID1(String chainID1)

getChainID2

public String getChainID2()

setChainID2

public void setChainID2(String chainID2)

getResnum1

public String getResnum1()

get residue number for first CYS. number and insertion code are joint together.

Returns:

the residue number of the first CYS.

setResnum1

public void setResnum1(String resnum1)

getResnum2

public String getResnum2()

get residue number for second CYS. number and insertion code are joint together.

Returns:

the residue number of the second CYS.

setResnum2

public void setResnum2(String resnum2)

toString

public String toString()

Overrides:

toString in class Object