Uses of Class
org.biojava.nbio.structure.align.AbstractStructureAlignment

Packages that use AbstractStructureAlignment

Package	Description
org.biojava.nbio.structure.align.ce	Classes related to the implementation of the CE alignment algorithm, here called jCE.
org.biojava.nbio.structure.align.seq

Uses of AbstractStructureAlignment in org.biojava.nbio.structure.align.ce

Subclasses of AbstractStructureAlignment in org.biojava.nbio.structure.align.ce

Modifier and Type	Class and Description
class	CeCPMain A wrapper for CeMain which sets default parameters to be appropriate for finding circular permutations.
class	CeMain The main class of the Java implementation of the Combinatorial Extension Algorithm (CE), as has been originally developed by I.
class	CeSideChainMain
class	OptimalCECPMain A wrapper for CeMain which sets default parameters to be appropriate for finding circular permutations.

Uses of AbstractStructureAlignment in org.biojava.nbio.structure.align.seq

Subclasses of AbstractStructureAlignment in org.biojava.nbio.structure.align.seq

Modifier and Type	Class and Description
class	SmithWaterman3Daligner provides a 3D superimposition based on the sequence alignment