Uses of Interface
org.biojava.nbio.structure.align.multiple.MultipleAlignmentEnsemble

Packages that use MultipleAlignmentEnsemble

Package	Description
org.biojava.nbio.structure.align.multiple

Uses of MultipleAlignmentEnsemble in org.biojava.nbio.structure.align.multiple

Classes in org.biojava.nbio.structure.align.multiple that implement MultipleAlignmentEnsemble

Modifier and Type	Class and Description
class	MultipleAlignmentEnsembleImpl A general implementation of a MultipleAlignmentEnsemble.

Methods in org.biojava.nbio.structure.align.multiple that return MultipleAlignmentEnsemble

Modifier and Type	Method and Description
MultipleAlignmentEnsemble	MultipleAlignmentEnsemble.clone() Creates and returns an identical copy of this ensemble, including a deep clone of all constituent alignments.
MultipleAlignmentEnsemble	MultipleAlignmentImpl.getEnsemble()
MultipleAlignmentEnsemble	MultipleAlignment.getEnsemble() Returns the parent Ensemble of the MultipleAlignment.

Methods in org.biojava.nbio.structure.align.multiple with parameters of type MultipleAlignmentEnsemble

Modifier and Type	Method and Description
void	MultipleAlignmentImpl.setEnsemble(MultipleAlignmentEnsemble parent)
void	MultipleAlignment.setEnsemble(MultipleAlignmentEnsemble parent) Set the back-reference to its parent Ensemble.

Constructors in org.biojava.nbio.structure.align.multiple with parameters of type MultipleAlignmentEnsemble

Constructor and Description
MultipleAlignmentImpl(MultipleAlignmentEnsemble ensemble) Constructor linking to an existing ensemble.