Uses of Interface
org.biojava.nbio.structure.align.multiple.ScoresCache

Packages that use ScoresCache

Package	Description
org.biojava.nbio.structure.align.multiple

Uses of ScoresCache in org.biojava.nbio.structure.align.multiple

Subinterfaces of ScoresCache in org.biojava.nbio.structure.align.multiple

Modifier and Type	Interface and Description
interface	Block A Block is a Data Structure that stores aligned positions of a MultipleAlignment that fulfill the following conditions:
interface	BlockSet A BlockSet is a Data Structure to store a flexible alignment part of a multiple alignment as a collection of Blocks.
interface	MultipleAlignment A MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment, as a return type.
interface	MultipleAlignmentEnsemble A MultipleAlignmentEnsemble is a collection of MultipleAlignments that share the same structures (Atoms) and creation properties (algorithm, version, creation time, etc.).

Classes in org.biojava.nbio.structure.align.multiple that implement ScoresCache

Modifier and Type	Class and Description
class	AbstractScoresCache
class	BlockImpl General implementation of a Block that supports alignments with gaps.
class	BlockSetImpl A general implementation of a BlockSet to store multiple alignments.
class	MultipleAlignmentEnsembleImpl A general implementation of a MultipleAlignmentEnsemble.
class	MultipleAlignmentImpl A general implementation of a MultipleAlignment.