| Package | Description |
|---|---|
| org.biojava.nbio.structure.align |
Classes for the alignment of structures.
|
| org.biojava.nbio.structure.align.cemc | |
| org.biojava.nbio.structure.align.multiple |
| Class and Description |
|---|
| MultipleAlignment
A MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment,
as a return type.
|
| Class and Description |
|---|
| MultipleAlignment
A MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment,
as a return type.
|
| Class and Description |
|---|
| AbstractScoresCache |
| Block
A Block is a Data Structure that stores aligned positions of a
MultipleAlignment
that fulfill the following conditions: |
| BlockImpl
General implementation of a Block that supports alignments with gaps.
|
| BlockSet
A BlockSet is a Data Structure to store a flexible alignment part of a
multiple alignment as a collection of
Blocks. |
| BlockSetImpl
A general implementation of a BlockSet to store multiple alignments.
|
| MultipleAlignment
A MultipleAlignment is a Data Structure to store the core information of a multiple structure alignment,
as a return type.
|
| MultipleAlignmentEnsemble
A MultipleAlignmentEnsemble is a collection of
MultipleAlignments that share the same structures (Atoms)
and creation properties (algorithm, version, creation time, etc.). |
| MultipleAlignmentEnsembleImpl
A general implementation of a
MultipleAlignmentEnsemble. |
| MultipleAlignmentImpl
A general implementation of a
MultipleAlignment. |
| MultipleSuperimposer |
| ScoresCache
Interface for classes which implement a temporary cache for various numeric scores,
e.g.
|
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