EcodDomain (biojava-structure 4.1.0 API)

java.lang.Object
- org.biojava.nbio.structure.ecod.EcodDomain

All Implemented Interfaces:

Serializable, Cloneable
```
public class EcodDomain
extends Object
implements Serializable, Cloneable
```
Author:

Spencer Bliven

See Also:
Serialized Form

Constructor Summary

Constructors
Constructor and Description
`EcodDomain()` Default constructor with all null properties
`EcodDomain(EcodDomain o)`
`EcodDomain(Long uid, String domainId, Boolean manual, Integer xGroup, Integer hGroup, Integer tGroup, Integer fGroup, String pdbId, String chainId, String range, String architectureName, String xGroupName, String hGroupName, String tGroupName, String fGroupName, Long assemblyId, Set<String> ligands)`
`EcodDomain(String domainId)`

Method Summary

Methods
Modifier and Type	Method and Description
`protected Object`	`clone()`
`boolean`	`equals(Object obj)`
`String`	`getArchitectureName()`
`Long`	`getAssemblyId()`
`String`	`getChainId()`
`String`	`getDomainId()`
`Integer`	`getFGroup()`
`String`	`getFGroupName()`
`Integer`	`getHGroup()`
`String`	`getHGroupName()`
`Set<String>`	`getLigands()`
`Boolean`	`getManual()`
`String`	`getPdbId()`
`String`	`getRange()`
`Integer`	`getTGroup()`
`String`	`getTGroupName()`
`Long`	`getUid()`
`Integer`	`getXGroup()`
`String`	`getXGroupName()`
`int`	`hashCode()`
`void`	`setArchitectureName(String architectureName)`
`void`	`setAssemblyId(Long assemblyId)`
`void`	`setChainId(String chainId)`
`void`	`setDomainId(String domainId)`
`void`	`setFGroup(Integer fGroup)`
`void`	`setFGroupName(String fGroupName)`
`void`	`setGroupName(String tGroupName)`
`void`	`setHGroup(Integer hGroup)`
`void`	`setHGroupName(String hGroupName)`
`void`	`setLigands(Set<String> ligands)`
`void`	`setManual(Boolean manual)`
`void`	`setPdbId(String pdbId)`
`void`	`setRange(String range)`
`void`	`setTGroup(Integer tGroup)`
`void`	`setUid(Long uid)`
`void`	`setXGroup(Integer xGroup)`
`void`	`setXGroupName(String xGroupName)`
`String`	`toString()`

Methods inherited from class java.lang.Object
finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

EcodDomain
```
public EcodDomain()
```
Default constructor with all null properties

EcodDomain

public EcodDomain(Long uid,
          String domainId,
          Boolean manual,
          Integer xGroup,
          Integer hGroup,
          Integer tGroup,
          Integer fGroup,
          String pdbId,
          String chainId,
          String range,
          String architectureName,
          String xGroupName,
          String hGroupName,
          String tGroupName,
          String fGroupName,
          Long assemblyId,
          Set<String> ligands)

EcodDomain
```
public EcodDomain(String domainId)
```

EcodDomain
```
public EcodDomain(EcodDomain o)
```

Method Detail

clone

protected Object clone()
                throws CloneNotSupportedException

Overrides:: clone in class Object
Throws:: CloneNotSupportedException

getUid
```
public Long getUid()
```

setUid
```
public void setUid(Long uid)
```

getDomainId
```
public String getDomainId()
```

setDomainId

public void setDomainId(String domainId)

getManual
```
public Boolean getManual()
```

setManual

public void setManual(Boolean manual)

getXGroup
```
public Integer getXGroup()
```

setXGroup

public void setXGroup(Integer xGroup)

getHGroup
```
public Integer getHGroup()
```

setHGroup

public void setHGroup(Integer hGroup)

getTGroup
```
public Integer getTGroup()
```

setTGroup

public void setTGroup(Integer tGroup)

getFGroup
```
public Integer getFGroup()
```

setFGroup

public void setFGroup(Integer fGroup)

getPdbId
```
public String getPdbId()
```

setPdbId
```
public void setPdbId(String pdbId)
```

getChainId
```
public String getChainId()
```

setChainId

public void setChainId(String chainId)

getRange
```
public String getRange()
```

setRange
```
public void setRange(String range)
```

getArchitectureName
```
public String getArchitectureName()
```

setArchitectureName

public void setArchitectureName(String architectureName)

getXGroupName
```
public String getXGroupName()
```

setXGroupName

public void setXGroupName(String xGroupName)

getHGroupName
```
public String getHGroupName()
```

setHGroupName

public void setHGroupName(String hGroupName)

getTGroupName
```
public String getTGroupName()
```

setGroupName

public void setGroupName(String tGroupName)

getFGroupName
```
public String getFGroupName()
```

setFGroupName

public void setFGroupName(String fGroupName)

getAssemblyId
```
public Long getAssemblyId()
```
Returns:
The assembly ID, or the DomainId if not in an assembly, or null if unknown.

setAssemblyId

public void setAssemblyId(Long assemblyId)

getLigands
```
public Set<String> getLigands()
```

setLigands

public void setLigands(Set<String> ligands)

toString
```
public String toString()
```
Overrides:

toString in class Object

hashCode
```
public int hashCode()
```
Overrides:

hashCode in class Object

equals
```
public boolean equals(Object obj)
```
Overrides:

equals in class Object

Class EcodDomain

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

EcodDomain

EcodDomain

EcodDomain

EcodDomain

Method Detail

clone

getUid

setUid

getDomainId

setDomainId

getManual

setManual

getXGroup

setXGroup

getHGroup

setHGroup

getTGroup

setTGroup

getFGroup

setFGroup

getPdbId

setPdbId

getChainId

setChainId

getRange

setRange

getArchitectureName

setArchitectureName

getXGroupName

setXGroupName

getHGroupName

setHGroupName

getTGroupName

setGroupName

getFGroupName

setFGroupName

getAssemblyId

setAssemblyId

getLigands

setLigands

toString

hashCode

equals