org.biojava.nbio.structure.io

Class PDBBioAssemblyParser

java.lang.Object

org.biojava.nbio.structure.io.PDBBioAssemblyParser

public class PDBBioAssemblyParser
extends Object

Parses REMARK 350 records in a PDB file and creates transformations to construct the quaternary structure of a protein from an asymmetric unit

Author:

Peter Rose, Andreas Prlic

Constructor Summary

Constructors

Constructor and Description
PDBBioAssemblyParser()

Method Summary

Methods

Modifier and Type	Method and Description
Map<Integer,BioAssemblyInfo>	getTransformationMap() Returns a map of bioassembly transformations
void	pdb_REMARK_350_Handler(String line) Parses REMARK 350 line.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PDBBioAssemblyParser

public PDBBioAssemblyParser()

Method Detail

pdb_REMARK_350_Handler

public void pdb_REMARK_350_Handler(String line)

Parses REMARK 350 line. See format description: http://www.wwpdb.org/documentation/format33/remarks2.html

Parameters:

line -

getTransformationMap

public Map<Integer,BioAssemblyInfo> getTransformationMap()

Returns a map of bioassembly transformations

Returns: