Uses of Class
org.biojava.nbio.structure.contact.AtomContact

Packages that use AtomContact

Package	Description
org.biojava.nbio.structure.contact

Uses of AtomContact in org.biojava.nbio.structure.contact

Methods in org.biojava.nbio.structure.contact that return AtomContact

Modifier and Type	Method and Description
AtomContact	AtomContactSet.getContact(Atom atom1, Atom atom2) Returns the corresponding AtomContact or null if no contact exists between the 2 given atoms

Methods in org.biojava.nbio.structure.contact that return types with arguments of type AtomContact

Modifier and Type	Method and Description
List<AtomContact>	GroupContact.getAtomContacts()
List<AtomContact>	GridCell.getContactsToOtherCell(GridCell otherCell, Atom[] iAtoms, Atom[] jAtoms, double cutoff) Calculates all distances of atoms between this cell and the given cell returning those that are within the given cutoff as a list of AtomContacts
List<AtomContact>	GridCell.getContactsWithinCell(Atom[] iAtoms, Atom[] jAtoms, double cutoff) Calculates all distances of atoms within this cell returning those that are within the given cutoff as a list of AtomContacts
List<AtomContact>	GroupContact.getContactsWithinDistance(double distance) Returns the list of atom contacts in this GroupContact that are within the given distance.
List<AtomContact>	AtomContactSet.getContactsWithinDistance(double distance) Returns the list of contacts from this set that are within the given distance.
Iterator<AtomContact>	AtomContactSet.iterator()

Methods in org.biojava.nbio.structure.contact with parameters of type AtomContact

Modifier and Type	Method and Description
void	AtomContactSet.add(AtomContact contact)
void	GroupContact.addAtomContact(AtomContact atomContact)

Method parameters in org.biojava.nbio.structure.contact with type arguments of type AtomContact

Modifier and Type	Method and Description
void	AtomContactSet.addAll(Collection<AtomContact> list)