org.biojava.nbio.structure.symmetry.utils

Class BlastClustReader

java.lang.Object

org.biojava.nbio.structure.symmetry.utils.BlastClustReader

All Implemented Interfaces:

Serializable

public class BlastClustReader
extends Object
implements Serializable

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
BlastClustReader(int sequenceIdentity)

Method Summary

Methods

Modifier and Type	Method and Description
List<List<String>>	getChainIdsInEntry(String pdbId)
List<List<String>>	getPdbChainIdClusters()
List<List<String>>	getPdbChainIdClusters(String pdbId)
String	getRepresentativeChain(String pdbId, String chainId)
Map<String,String>	getRepresentatives(String pdbId)
int	indexOf(String pdbId, String chainId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BlastClustReader

public BlastClustReader(int sequenceIdentity)

Method Detail

getPdbChainIdClusters

public List<List<String>> getPdbChainIdClusters()

getRepresentatives

public Map<String,String> getRepresentatives(String pdbId)

getRepresentativeChain

public String getRepresentativeChain(String pdbId,
                            String chainId)

indexOf

public int indexOf(String pdbId,
          String chainId)

getPdbChainIdClusters

public List<List<String>> getPdbChainIdClusters(String pdbId)

getChainIdsInEntry

public List<List<String>> getChainIdsInEntry(String pdbId)