SSBondImpl (biojava-structure 4.2.12 API)

java.lang.Object
- org.biojava.nbio.structure.io.SSBondImpl

All Implemented Interfaces:

Serializable, Cloneable, PDBRecord
```
public class SSBondImpl
extends Object
implements PDBRecord, Serializable, Cloneable
```
A simple bean to store disulfide bridge information, the SSBOND records in the PDB files. The two residues specified here are CYS residues that form a Disulfide bridge.

Author:

Andreas Prlic

See Also:
Serialized Form

Constructor Summary

Constructors
Constructor and Description

SSBondImpl()

Constructors
Constructor and Description
`SSBondImpl()`

Method Summary

Methods
Modifier and Type	Method and Description
`SSBondImpl`	`clone()`
`boolean`	`equals(Object obj)`
`String`	`getChainID1()`
`String`	`getChainID2()`
`String`	`getInsCode1()`
`String`	`getInsCode2()`
`String`	`getResnum1()`
`String`	`getResnum2()`
`int`	`getSerNum()`
`static List<SSBondImpl>`	`getSsBondListFromBondList(List<Bond> bonds)`
`int`	`hashCode()`
`void`	`setChainID1(String chainID1)`
`void`	`setChainID2(String chainID2)`
`void`	`setInsCode1(String insCode1)`
`void`	`setInsCode2(String insCode2)`
`void`	`setResnum1(String resnum1)`
`void`	`setResnum2(String resnum2)`
`void`	`setSerNum(int serNum)` get serial number of this SSBOND in PDB file
`String`	`toPDB()` Returns a PDB file like representation of this record.
`void`	`toPDB(StringBuffer buf)` Append the PDB representation of this SSBOND to the provided StringBuffer
`static SSBondImpl`	`toSsBond(Bond bond)` Converts the given `Bond` object into a `SSBondImpl`.
`String`	`toString()`

Methods inherited from class java.lang.Object
finalize, getClass, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - SSBondImpl
```
public SSBondImpl()
```
- Method Detail
  - toPDB
```
public String toPDB()
```
    Description copied from interface: PDBRecord
    
    Returns a PDB file like representation of this record.
    
    Specified by:
    
    toPDB in interface PDBRecord
    
    Returns:
    a String providing a PDB file like representation of the record.
  - toPDB
```
public void toPDB(StringBuffer buf)
```
    Append the PDB representation of this SSBOND to the provided StringBuffer
    
    Specified by:
    
    toPDB in interface PDBRecord
    
    Parameters:
    buf - a StringBuffer to print the PDB representation to
  - getInsCode1
```
public String getInsCode1()
```
  - setInsCode1
```
public void setInsCode1(String insCode1)
```
  - getInsCode2
```
public String getInsCode2()
```
  - setInsCode2
```
public void setInsCode2(String insCode2)
```
  - getSerNum
```
public int getSerNum()
```
  - setSerNum
```
public void setSerNum(int serNum)
```
    get serial number of this SSBOND in PDB file
    
    Parameters:
    serNum -
  - clone
```
public SSBondImpl clone()
```
    Overrides:
    
    clone in class Object
  - getChainID1
```
public String getChainID1()
```
  - setChainID1
```
public void setChainID1(String chainID1)
```
  - getChainID2
```
public String getChainID2()
```
  - setChainID2
```
public void setChainID2(String chainID2)
```
  - getResnum1
```
public String getResnum1()
```
  - setResnum1
```
public void setResnum1(String resnum1)
```
  - getResnum2
```
public String getResnum2()
```
  - setResnum2
```
public void setResnum2(String resnum2)
```
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class Object
  - equals
```
public boolean equals(Object obj)
```
    Overrides:
    
    equals in class Object
  - getSsBondListFromBondList
```
public static List<SSBondImpl> getSsBondListFromBondList(List<Bond> bonds)
```
  - toSsBond
```
public static SSBondImpl toSsBond(Bond bond)
```
    Converts the given Bond object into a SSBondImpl.
    
    Returns:
    
    Throws:
    
    IllegalArgumentException - if this Bond is not between two CYS residues

Class SSBondImpl

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

SSBondImpl

Method Detail

toPDB

toPDB

getInsCode1

setInsCode1

getInsCode2

setInsCode2

getSerNum

setSerNum

clone

getChainID1

setChainID1

getChainID2

setChainID2

getResnum1

setResnum1

getResnum2

setResnum2

toString

hashCode

equals

getSsBondListFromBondList

toSsBond