Uses of Class
org.biojava.nbio.structure.io.mmcif.model.PdbxStructAssemblyGen

Packages that use PdbxStructAssemblyGen

Package	Description
org.biojava.nbio.structure.io.mmcif	Input and Output of mmcif files.
org.biojava.nbio.structure.io.mmcif.model	Datamodel objects used for processing mmcif files.
org.biojava.nbio.structure.quaternary
org.biojava.nbio.structure.quaternary.io

Uses of PdbxStructAssemblyGen in org.biojava.nbio.structure.io.mmcif

Methods in org.biojava.nbio.structure.io.mmcif that return types with arguments of type PdbxStructAssemblyGen

Modifier and Type	Method and Description
List<PdbxStructAssemblyGen>	SimpleMMcifConsumer.getStructAssemblyGens()

Methods in org.biojava.nbio.structure.io.mmcif with parameters of type PdbxStructAssemblyGen

Modifier and Type	Method and Description
void	SimpleMMcifConsumer.newPdbxStrucAssemblyGen(PdbxStructAssemblyGen strucAssembly)
void	MMcifConsumer.newPdbxStrucAssemblyGen(PdbxStructAssemblyGen strucAssembly)
void	MetalBondConsumer.newPdbxStrucAssemblyGen(PdbxStructAssemblyGen strucAssembly)
void	ChemCompConsumer.newPdbxStrucAssemblyGen(PdbxStructAssemblyGen strucAssembly)

Uses of PdbxStructAssemblyGen in org.biojava.nbio.structure.io.mmcif.model

Methods in org.biojava.nbio.structure.io.mmcif.model that return types with arguments of type PdbxStructAssemblyGen

Modifier and Type	Method and Description
List<PdbxStructAssemblyGen>	PdbxStructAssemblyGenXMLContainer.getPdbxStructAssemblyGens()

Method parameters in org.biojava.nbio.structure.io.mmcif.model with type arguments of type PdbxStructAssemblyGen

Modifier and Type	Method and Description
void	PdbxStructAssemblyGenXMLContainer.setPdbxStructAssemblies(List<PdbxStructAssemblyGen> d)

Uses of PdbxStructAssemblyGen in org.biojava.nbio.structure.quaternary

Method parameters in org.biojava.nbio.structure.quaternary with type arguments of type PdbxStructAssemblyGen

Modifier and Type	Method and Description
ArrayList<BiologicalAssemblyTransformation>	BiologicalAssemblyBuilder.getBioUnitTransformationList(PdbxStructAssembly psa, List<PdbxStructAssemblyGen> psags, List<PdbxStructOperList> operators) Returns a list of transformation matrices for the generation of a macromolecular assembly for the specified assembly Id.

Uses of PdbxStructAssemblyGen in org.biojava.nbio.structure.quaternary.io

Methods in org.biojava.nbio.structure.quaternary.io that return types with arguments of type PdbxStructAssemblyGen

Modifier and Type	Method and Description
List<PdbxStructAssemblyGen>	RemoteRawBioUnitDataProvider.getPdbxStructAssemblyGen(int biolAssemblyNr)
List<PdbxStructAssemblyGen>	RawBioUnitDataProvider.getPdbxStructAssemblyGen(int biolAssemblyNr) get the data for a particular pdbxStructAssemblyGen.
List<PdbxStructAssemblyGen>	MmCifPDBBiolAssemblyProvider.getPdbxStructAssemblyGen(int biolAssemblyNr)
List<PdbxStructAssemblyGen>	RemoteRawBioUnitDataProvider.getPdbxStructAssemblyGens()
List<PdbxStructAssemblyGen>	RawBioUnitDataProvider.getPdbxStructAssemblyGens() Data access method for list describing all assemblies
List<PdbxStructAssemblyGen>	MmCifPDBBiolAssemblyProvider.getPdbxStructAssemblyGens()