org.biojava.nbio.structure.symmetry.core

Class QuatSymmetryResults

java.lang.Object

org.biojava.nbio.structure.symmetry.core.QuatSymmetryResults

public class QuatSymmetryResults
extends Object

Holds the results of quaternary symmetry perception.

Author:

Peter Rose, Aleix Lafita

Constructor Summary

Constructors

Constructor and Description
QuatSymmetryResults(Subunits subunits, HelixLayers helixLayers, SymmetryPerceptionMethod method)
QuatSymmetryResults(Subunits subunits, RotationGroup rotationGroup, SymmetryPerceptionMethod method)

Method Summary

Modifier and Type	Method and Description
HelixLayers	getHelixLayers() Returns helix layers (layer lines) as a list of helices that describe a helical structure
SymmetryPerceptionMethod	getMethod() Returns the method used for symmetry perception.
int	getNucleicAcidChainCount()
RotationGroup	getRotationGroup() Returns rotation group (point group) information representing rotational quaternary symmetry, see http://en.wikipedia.org/wiki/Rotation_group_SO(3)
QuatSymmetryScores	getScores()
Subunits	getSubunits() Returns protein subunit information that was used to determine symmetry information
String	getSymmetry() Returns the symmetry group.
boolean	isLocal()
void	setLocal(boolean local)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

QuatSymmetryResults

public QuatSymmetryResults(Subunits subunits,
                           RotationGroup rotationGroup,
                           SymmetryPerceptionMethod method)

QuatSymmetryResults

public QuatSymmetryResults(Subunits subunits,
                           HelixLayers helixLayers,
                           SymmetryPerceptionMethod method)

Method Detail

getSubunits

public Subunits getSubunits()

Returns protein subunit information that was used to determine symmetry information

Returns:

getRotationGroup

public RotationGroup getRotationGroup()

Returns rotation group (point group) information representing rotational quaternary symmetry, see http://en.wikipedia.org/wiki/Rotation_group_SO(3)

Returns:

rotation group

getHelixLayers

public HelixLayers getHelixLayers()

Returns helix layers (layer lines) as a list of helices that describe a helical structure

getMethod

public SymmetryPerceptionMethod getMethod()

Returns the method used for symmetry perception.

Returns:

method

getSymmetry

public String getSymmetry()

Returns the symmetry group. For point groups returns the point group symbol and for helical symmetry returns "H".

Returns:

symmetry group symbol

getScores

public QuatSymmetryScores getScores()

getNucleicAcidChainCount

public int getNucleicAcidChainCount()

toString

public String toString()

Overrides:

toString in class Object

isLocal

public boolean isLocal()

setLocal

public void setLocal(boolean local)