Package org.biojava.nbio.structure.io.mmcif.model

Class EntitySrcGen

  • public class EntitySrcGen
extends Object
    Data items in the ENTITY_SRC_GEN category record details of the source from which the entity was obtained in cases where the source was genetically manipulated. The following are treated separately: items pertaining to the tissue from which the gene was obtained, items pertaining to the host organism for gene expression and items pertaining to the actual producing organism (plasmid).
    Author:
    Andreas Prlic

    • Constructor Detail

      • EntitySrcGen

        public EntitySrcGen()

    • Method Detail

      • getEntity_id

        public String getEntity_id()

      • setEntity_id

        public void setEntity_id​(String entity_id)

      • getExpression_system_id

        public String getExpression_system_id()

      • setExpression_system_id

        public void setExpression_system_id​(String expression_system_id)

      • getGene_src_common_name

        public String getGene_src_common_name()

      • setGene_src_common_name

        public void setGene_src_common_name​(String gene_src_common_name)

      • getGene_src_details

        public String getGene_src_details()

      • setGene_src_details

        public void setGene_src_details​(String gene_src_details)

      • getGene_src_dev_stage

        public String getGene_src_dev_stage()

      • setGene_src_dev_stage

        public void setGene_src_dev_stage​(String gene_src_dev_stage)

      • getGene_src_genus

        public String getGene_src_genus()

      • setGene_src_genus

        public void setGene_src_genus​(String gene_src_genus)

      • getGene_src_species

        public String getGene_src_species()

      • setGene_src_species

        public void setGene_src_species​(String gene_src_species)

      • getGene_src_strain

        public String getGene_src_strain()

      • setGene_src_strain

        public void setGene_src_strain​(String gene_src_strain)

      • getGene_src_tissue

        public String getGene_src_tissue()

      • setGene_src_tissue

        public void setGene_src_tissue​(String gene_src_tissue)

      • getGene_src_tissue_fraction

        public String getGene_src_tissue_fraction()

      • setGene_src_tissue_fraction

        public void setGene_src_tissue_fraction​(String gene_src_tissue_fraction)

      • getHost_org_common_name

        public String getHost_org_common_name()

      • setHost_org_common_name

        public void setHost_org_common_name​(String host_org_common_name)

      • getHost_org_details

        public String getHost_org_details()

      • setHost_org_details

        public void setHost_org_details​(String host_org_details)

      • getHost_org_genus

        public String getHost_org_genus()

      • setHost_org_genus

        public void setHost_org_genus​(String host_org_genus)

      • getHost_org_species

        public String getHost_org_species()

      • setHost_org_species

        public void setHost_org_species​(String host_org_species)

      • getHost_org_strain

        public String getHost_org_strain()

      • setHost_org_strain

        public void setHost_org_strain​(String host_org_strain)

      • getPdbx_src_id

        public String getPdbx_src_id()

      • setPdbx_src_id

        public void setPdbx_src_id​(String pdbx_src_id)

      • getPdbx_seq_type

        public String getPdbx_seq_type()

      • setPdbx_seq_type

        public void setPdbx_seq_type​(String pdbx_seq_type)

      • getPdbx_alt_source_flag

        public String getPdbx_alt_source_flag()
        Returns:
        the pdbx_alt_source_flag

      • setPdbx_alt_source_flag

        public void setPdbx_alt_source_flag​(String pdbx_alt_source_flag)
        Parameters:
        pdbx_alt_source_flag - the pdbx_alt_source_flag to set

      • getPdbx_beg_seq_num

        public String getPdbx_beg_seq_num()

      • setPdbx_beg_seq_num

        public void setPdbx_beg_seq_num​(String pdbx_beg_seq_num)

      • getPdbx_end_seq_num

        public String getPdbx_end_seq_num()

      • setPdbx_end_seq_num

        public void setPdbx_end_seq_num​(String pdbx_end_seq_num)

      • getPdbx_description

        public String getPdbx_description()

      • setPdbx_description

        public void setPdbx_description​(String pdbx_description)

      • getPdbx_gene_src_atcc

        public String getPdbx_gene_src_atcc()

      • setPdbx_gene_src_atcc

        public void setPdbx_gene_src_atcc​(String pdbx_gene_src_atcc)

      • getPdbx_gene_src_cell

        public String getPdbx_gene_src_cell()

      • setPdbx_gene_src_cell

        public void setPdbx_gene_src_cell​(String pdbx_gene_src_cell)

      • getPdbx_gene_src_cell_line

        public String getPdbx_gene_src_cell_line()

      • setPdbx_gene_src_cell_line

        public void setPdbx_gene_src_cell_line​(String pdbx_gene_src_cell_line)

      • getPdbx_gene_src_cellular_location

        public String getPdbx_gene_src_cellular_location()

      • setPdbx_gene_src_cellular_location

        public void setPdbx_gene_src_cellular_location​(String pdbx_gene_src_cellular_location)

      • getPdbx_gene_src_fragment

        public String getPdbx_gene_src_fragment()

      • setPdbx_gene_src_fragment

        public void setPdbx_gene_src_fragment​(String pdbx_gene_src_fragment)

      • getPdbx_gene_src_gene

        public String getPdbx_gene_src_gene()

      • setPdbx_gene_src_gene

        public void setPdbx_gene_src_gene​(String pdbx_gene_src_gene)

      • getPdbx_gene_src_ncbi_taxonomy_id

        public String getPdbx_gene_src_ncbi_taxonomy_id()

      • setPdbx_gene_src_ncbi_taxonomy_id

        public void setPdbx_gene_src_ncbi_taxonomy_id​(String pdbx_gene_src_ncbi_taxonomy_id)

      • getPdbx_gene_src_organ

        public String getPdbx_gene_src_organ()

      • setPdbx_gene_src_organ

        public void setPdbx_gene_src_organ​(String pdbx_gene_src_organ)

      • getPdbx_gene_src_organelle

        public String getPdbx_gene_src_organelle()

      • setPdbx_gene_src_organelle

        public void setPdbx_gene_src_organelle​(String pdbx_gene_src_organelle)

      • getPdbx_gene_src_plasmid

        public String getPdbx_gene_src_plasmid()

      • setPdbx_gene_src_plasmid

        public void setPdbx_gene_src_plasmid​(String pdbx_gene_src_plasmid)

      • getPdbx_gene_src_plasmid_name

        public String getPdbx_gene_src_plasmid_name()

      • setPdbx_gene_src_plasmid_name

        public void setPdbx_gene_src_plasmid_name​(String pdbx_gene_src_plasmid_name)

      • getPdbx_gene_src_scientific_name

        public String getPdbx_gene_src_scientific_name()

      • setPdbx_gene_src_scientific_name

        public void setPdbx_gene_src_scientific_name​(String pdbx_gene_src_scientific_name)

      • getPdbx_gene_src_variant

        public String getPdbx_gene_src_variant()

      • setPdbx_gene_src_variant

        public void setPdbx_gene_src_variant​(String pdbx_gene_src_variant)

      • getPdbx_host_org_atcc

        public String getPdbx_host_org_atcc()

      • setPdbx_host_org_atcc

        public void setPdbx_host_org_atcc​(String pdbx_host_org_atcc)

      • getPdbx_host_org_cell

        public String getPdbx_host_org_cell()

      • setPdbx_host_org_cell

        public void setPdbx_host_org_cell​(String pdbx_host_org_cell)

      • getPdbx_host_org_cell_line

        public String getPdbx_host_org_cell_line()

      • setPdbx_host_org_cell_line

        public void setPdbx_host_org_cell_line​(String pdbx_host_org_cell_line)

      • getPdbx_host_org_cellular_location

        public String getPdbx_host_org_cellular_location()

      • setPdbx_host_org_cellular_location

        public void setPdbx_host_org_cellular_location​(String pdbx_host_org_cellular_location)

      • getPdbx_host_org_culture_collection

        public String getPdbx_host_org_culture_collection()

      • setPdbx_host_org_culture_collection

        public void setPdbx_host_org_culture_collection​(String pdbx_host_org_culture_collection)

      • getPdbx_host_org_gene

        public String getPdbx_host_org_gene()

      • setPdbx_host_org_gene

        public void setPdbx_host_org_gene​(String pdbx_host_org_gene)

      • getPdbx_host_org_ncbi_taxonomy_id

        public String getPdbx_host_org_ncbi_taxonomy_id()

      • setPdbx_host_org_ncbi_taxonomy_id

        public void setPdbx_host_org_ncbi_taxonomy_id​(String pdbx_host_org_ncbi_taxonomy_id)

      • getPdbx_host_org_organ

        public String getPdbx_host_org_organ()

      • setPdbx_host_org_organ

        public void setPdbx_host_org_organ​(String pdbx_host_org_organ)

      • getPdbx_host_org_organelle

        public String getPdbx_host_org_organelle()

      • setPdbx_host_org_organelle

        public void setPdbx_host_org_organelle​(String pdbx_host_org_organelle)

      • getPdbx_host_org_scientific_name

        public String getPdbx_host_org_scientific_name()

      • setPdbx_host_org_scientific_name

        public void setPdbx_host_org_scientific_name​(String pdbx_host_org_scientific_name)

      • getPdbx_host_org_strain

        public String getPdbx_host_org_strain()

      • setPdbx_host_org_strain

        public void setPdbx_host_org_strain​(String pdbx_host_org_strain)

      • getPdbx_host_org_tissue

        public String getPdbx_host_org_tissue()

      • setPdbx_host_org_tissue

        public void setPdbx_host_org_tissue​(String pdbx_host_org_tissue)

      • getPdbx_host_org_tissue_fraction

        public String getPdbx_host_org_tissue_fraction()

      • setPdbx_host_org_tissue_fraction

        public void setPdbx_host_org_tissue_fraction​(String pdbx_host_org_tissue_fraction)

      • getPdbx_host_org_variant

        public String getPdbx_host_org_variant()

      • setPdbx_host_org_variant

        public void setPdbx_host_org_variant​(String pdbx_host_org_variant)

      • getPdbx_host_org_vector

        public String getPdbx_host_org_vector()

      • setPdbx_host_org_vector

        public void setPdbx_host_org_vector​(String pdbx_host_org_vector)

      • getPdbx_host_org_vector_type

        public String getPdbx_host_org_vector_type()

      • setPdbx_host_org_vector_type

        public void setPdbx_host_org_vector_type​(String pdbx_host_org_vector_type)

      • getPlasmid_details

        public String getPlasmid_details()

      • setPlasmid_details

        public void setPlasmid_details​(String plasmid_details)

      • getPlasmid_name

        public String getPlasmid_name()

      • setPlasmid_name

        public void setPlasmid_name​(String plasmid_name)

      • getStart_construct_id

        public String getStart_construct_id()

      • setStart_construct_id

        public void setStart_construct_id​(String start_construct_id)