Package org.biojava.nbio.structure.io.mmcif.model

Class Refine

  • public class Refine
extends Object

    • Constructor Detail

      • Refine

        public Refine()

    • Method Detail

      • getEntry_id

        public String getEntry_id()

      • setEntry_id

        public void setEntry_id​(String entry_id)

      • getLs_number_reflns_obs

        public String getLs_number_reflns_obs()

      • setLs_number_reflns_obs

        public void setLs_number_reflns_obs​(String ls_number_reflns_obs)

      • getLs_number_reflns_all

        public String getLs_number_reflns_all()

      • setLs_number_reflns_all

        public void setLs_number_reflns_all​(String ls_number_reflns_all)

      • getPdbx_ls_sigma_I

        public String getPdbx_ls_sigma_I()

      • setPdbx_ls_sigma_I

        public void setPdbx_ls_sigma_I​(String pdbx_ls_sigma_I)

      • getPdbx_ls_sigma_F

        public String getPdbx_ls_sigma_F()

      • setPdbx_ls_sigma_F

        public void setPdbx_ls_sigma_F​(String pdbx_ls_sigma_F)

      • getPdbx_data_cutoff_high_absF

        public String getPdbx_data_cutoff_high_absF()

      • setPdbx_data_cutoff_high_absF

        public void setPdbx_data_cutoff_high_absF​(String pdbx_data_cutoff_high_absF)

      • getPdbx_data_cutoff_low_absF

        public String getPdbx_data_cutoff_low_absF()

      • setPdbx_data_cutoff_low_absF

        public void setPdbx_data_cutoff_low_absF​(String pdbx_data_cutoff_low_absF)

      • getPdbx_data_cutoff_high_rms_absF

        public String getPdbx_data_cutoff_high_rms_absF()

      • setPdbx_data_cutoff_high_rms_absF

        public void setPdbx_data_cutoff_high_rms_absF​(String pdbx_data_cutoff_high_rms_absF)

      • getLs_d_res_low

        public String getLs_d_res_low()

      • setLs_d_res_low

        public void setLs_d_res_low​(String ls_d_res_low)

      • getLs_d_res_high

        public String getLs_d_res_high()

      • setLs_d_res_high

        public void setLs_d_res_high​(String ls_d_res_high)

      • getLs_percent_reflns_obs

        public String getLs_percent_reflns_obs()

      • setLs_percent_reflns_obs

        public void setLs_percent_reflns_obs​(String ls_percent_reflns_obs)

      • getLs_R_factor_obs

        public String getLs_R_factor_obs()

      • setLs_R_factor_obs

        public void setLs_R_factor_obs​(String ls_R_factor_obs)

      • getLs_R_factor_all

        public String getLs_R_factor_all()

      • setLs_R_factor_all

        public void setLs_R_factor_all​(String ls_R_factor_all)

      • getLs_R_factor_R_work

        public String getLs_R_factor_R_work()

      • setLs_R_factor_R_work

        public void setLs_R_factor_R_work​(String ls_R_factor_R_work)

      • getLs_R_factor_R_free

        public String getLs_R_factor_R_free()

      • setLs_R_factor_R_free

        public void setLs_R_factor_R_free​(String ls_R_factor_R_free)

      • getLs_R_factor_R_free_error

        public String getLs_R_factor_R_free_error()

      • setLs_R_factor_R_free_error

        public void setLs_R_factor_R_free_error​(String ls_R_factor_R_free_error)

      • getLs_R_factor_R_free_error_details

        public String getLs_R_factor_R_free_error_details()

      • setLs_R_factor_R_free_error_details

        public void setLs_R_factor_R_free_error_details​(String ls_R_factor_R_free_error_details)

      • getLs_percent_reflns_R_free

        public String getLs_percent_reflns_R_free()

      • setLs_percent_reflns_R_free

        public void setLs_percent_reflns_R_free​(String ls_percent_reflns_R_free)

      • getLs_number_reflns_R_free

        public String getLs_number_reflns_R_free()

      • setLs_number_reflns_R_free

        public void setLs_number_reflns_R_free​(String ls_number_reflns_R_free)

      • getLs_number_parameters

        public String getLs_number_parameters()

      • setLs_number_parameters

        public void setLs_number_parameters​(String ls_number_parameters)

      • getLs_number_restraints

        public String getLs_number_restraints()

      • setLs_number_restraints

        public void setLs_number_restraints​(String ls_number_restraints)

      • getOccupancy_min

        public String getOccupancy_min()

      • setOccupancy_min

        public void setOccupancy_min​(String occupancy_min)

      • getOccupancy_max

        public String getOccupancy_max()

      • setOccupancy_max

        public void setOccupancy_max​(String occupancy_max)

      • getB_iso_mean

        public String getB_iso_mean()

      • setB_iso_mean

        public void setB_iso_mean​(String b_iso_mean)

      • getSolvent_model_details

        public String getSolvent_model_details()

      • setSolvent_model_details

        public void setSolvent_model_details​(String solvent_model_details)

      • getSolvent_model_param_ksol

        public String getSolvent_model_param_ksol()

      • setSolvent_model_param_ksol

        public void setSolvent_model_param_ksol​(String solvent_model_param_ksol)

      • getSolvent_model_param_bsol

        public String getSolvent_model_param_bsol()

      • setSolvent_model_param_bsol

        public void setSolvent_model_param_bsol​(String solvent_model_param_bsol)

      • getPdbx_ls_cross_valid_method

        public String getPdbx_ls_cross_valid_method()

      • setPdbx_ls_cross_valid_method

        public void setPdbx_ls_cross_valid_method​(String pdbx_ls_cross_valid_method)

      • getDetails

        public String getDetails()

      • setDetails

        public void setDetails​(String details)

      • getPdbx_starting_model

        public String getPdbx_starting_model()

      • setPdbx_starting_model

        public void setPdbx_starting_model​(String pdbx_starting_model)

      • getPdbx_method_to_determine_struct

        public String getPdbx_method_to_determine_struct()

      • setPdbx_method_to_determine_struct

        public void setPdbx_method_to_determine_struct​(String pdbx_method_to_determine_struct)

      • getPdbx_isotropic_thermal_model

        public String getPdbx_isotropic_thermal_model()

      • setPdbx_isotropic_thermal_model

        public void setPdbx_isotropic_thermal_model​(String pdbx_isotropic_thermal_model)

      • getPdbx_stereochemistry_target_values

        public String getPdbx_stereochemistry_target_values()

      • setPdbx_stereochemistry_target_values

        public void setPdbx_stereochemistry_target_values​(String pdbx_stereochemistry_target_values)

      • getPdbx_stereochem_target_val_spec_case

        public String getPdbx_stereochem_target_val_spec_case()

      • setPdbx_stereochem_target_val_spec_case

        public void setPdbx_stereochem_target_val_spec_case​(String pdbx_stereochem_target_val_spec_case)

      • getPdbx_R_Free_selection_details

        public String getPdbx_R_Free_selection_details()

      • setPdbx_R_Free_selection_details

        public void setPdbx_R_Free_selection_details​(String pdbx_R_Free_selection_details)

      • getPdbx_overall_ESU_R

        public String getPdbx_overall_ESU_R()

      • setPdbx_overall_ESU_R

        public void setPdbx_overall_ESU_R​(String pdbx_overall_ESU_R)

      • getPdbx_overall_ESU_R_Free

        public String getPdbx_overall_ESU_R_Free()

      • setPdbx_overall_ESU_R_Free

        public void setPdbx_overall_ESU_R_Free​(String pdbx_overall_ESU_R_Free)

      • getOverall_SU_ML

        public String getOverall_SU_ML()

      • setOverall_SU_ML

        public void setOverall_SU_ML​(String overall_SU_ML)

      • getOverall_SU_B

        public String getOverall_SU_B()

      • setOverall_SU_B

        public void setOverall_SU_B​(String overall_SU_B)

      • getPdbx_refine_id

        public String getPdbx_refine_id()

      • setPdbx_refine_id

        public void setPdbx_refine_id​(String pdbx_refine_id)

      • getLs_redundancy_reflns_obs

        public String getLs_redundancy_reflns_obs()

      • setLs_redundancy_reflns_obs

        public void setLs_redundancy_reflns_obs​(String ls_redundancy_reflns_obs)

      • getPdbx_overall_phase_error

        public String getPdbx_overall_phase_error()

      • setPdbx_overall_phase_error

        public void setPdbx_overall_phase_error​(String pdbx_overall_phase_error)

      • getB_iso_min

        public String getB_iso_min()

      • setB_iso_min

        public void setB_iso_min​(String b_iso_min)

      • getB_iso_max

        public String getB_iso_max()

      • setB_iso_max

        public void setB_iso_max​(String b_iso_max)

      • getCorrelation_coeff_Fo_to_Fc

        public String getCorrelation_coeff_Fo_to_Fc()

      • setCorrelation_coeff_Fo_to_Fc

        public void setCorrelation_coeff_Fo_to_Fc​(String correlation_coeff_Fo_to_Fc)

      • getCorrelation_coeff_Fo_to_Fc_free

        public String getCorrelation_coeff_Fo_to_Fc_free()

      • setCorrelation_coeff_Fo_to_Fc_free

        public void setCorrelation_coeff_Fo_to_Fc_free​(String correlation_coeff_Fo_to_Fc_free)

      • getPdbx_solvent_vdw_probe_radii

        public String getPdbx_solvent_vdw_probe_radii()

      • setPdbx_solvent_vdw_probe_radii

        public void setPdbx_solvent_vdw_probe_radii​(String pdbx_solvent_vdw_probe_radii)

      • getPdbx_solvent_ion_probe_radii

        public String getPdbx_solvent_ion_probe_radii()

      • setPdbx_solvent_ion_probe_radii

        public void setPdbx_solvent_ion_probe_radii​(String pdbx_solvent_ion_probe_radii)

      • getPdbx_solvent_shrinkage_radii

        public String getPdbx_solvent_shrinkage_radii()

      • setPdbx_solvent_shrinkage_radii

        public void setPdbx_solvent_shrinkage_radii​(String pdbx_solvent_shrinkage_radii)

      • getOverall_SU_R_Cruickshank_DPI

        public String getOverall_SU_R_Cruickshank_DPI()

      • setOverall_SU_R_Cruickshank_DPI

        public void setOverall_SU_R_Cruickshank_DPI​(String overall_SU_R_Cruickshank_DPI)

      • getOverall_SU_R_free

        public String getOverall_SU_R_free()

      • setOverall_SU_R_free

        public void setOverall_SU_R_free​(String overall_SU_R_free)

      • getLs_wR_factor_R_free

        public String getLs_wR_factor_R_free()

      • setLs_wR_factor_R_free

        public void setLs_wR_factor_R_free​(String ls_wR_factor_R_free)

      • getLs_wR_factor_R_work

        public String getLs_wR_factor_R_work()

      • setLs_wR_factor_R_work

        public void setLs_wR_factor_R_work​(String ls_wR_factor_R_work)

      • getOverall_FOM_free_R_set

        public String getOverall_FOM_free_R_set()

      • setOverall_FOM_free_R_set

        public void setOverall_FOM_free_R_set​(String overall_FOM_free_R_set)

      • getOverall_FOM_work_R_set

        public String getOverall_FOM_work_R_set()

      • setOverall_FOM_work_R_set

        public void setOverall_FOM_work_R_set​(String overall_FOM_work_R_set)

      • getPdbx_diffrn_id

        public String getPdbx_diffrn_id()

      • setPdbx_diffrn_id

        public void setPdbx_diffrn_id​(String pdbx_diffrn_id)

      • getPdbx_TLS_residual_ADP_flag

        public String getPdbx_TLS_residual_ADP_flag()

      • setPdbx_TLS_residual_ADP_flag

        public void setPdbx_TLS_residual_ADP_flag​(String pdbx_TLS_residual_ADP_flag)

      • getPdbx_overall_SU_R_free_Cruickshank_DPI

        public String getPdbx_overall_SU_R_free_Cruickshank_DPI()

      • setPdbx_overall_SU_R_free_Cruickshank_DPI

        public void setPdbx_overall_SU_R_free_Cruickshank_DPI​(String pdbx_overall_SU_R_free_Cruickshank_DPI)

      • getPdbx_overall_SU_R_Blow_DPI

        public String getPdbx_overall_SU_R_Blow_DPI()

      • setPdbx_overall_SU_R_Blow_DPI

        public void setPdbx_overall_SU_R_Blow_DPI​(String pdbx_overall_SU_R_Blow_DPI)

      • getPdbx_overall_SU_R_free_Blow_DPI

        public String getPdbx_overall_SU_R_free_Blow_DPI()

      • setPdbx_overall_SU_R_free_Blow_DPI

        public void setPdbx_overall_SU_R_free_Blow_DPI​(String pdbx_overall_SU_R_free_Blow_DPI)

      • getLs_matrix_type

        public String getLs_matrix_type()

      • setLs_matrix_type

        public void setLs_matrix_type​(String ls_matrix_type)

      • getLs_number_reflns_R_work

        public String getLs_number_reflns_R_work()

      • setLs_number_reflns_R_work

        public void setLs_number_reflns_R_work​(String ls_number_reflns_R_work)

      • getAniso_B11

        public String getAniso_B11()

      • setAniso_B11

        public void setAniso_B11​(String aniso_B11)

      • getAniso_B22

        public String getAniso_B22()

      • setAniso_B22

        public void setAniso_B22​(String aniso_B22)

      • getAniso_B33

        public String getAniso_B33()

      • setAniso_B33

        public void setAniso_B33​(String aniso_B33)

      • getAniso_B12

        public String getAniso_B12()

      • setAniso_B12

        public void setAniso_B12​(String aniso_B12)

      • getAniso_B13

        public String getAniso_B13()

      • setAniso_B13

        public void setAniso_B13​(String aniso_B13)

      • getAniso_B23

        public String getAniso_B23()

      • setAniso_B23

        public void setAniso_B23​(String aniso_B23)