org.biojava.nbio.structure

Class Model

java.lang.Object

org.biojava.nbio.structure.Model

All Implemented Interfaces:

java.io.Serializable

public class Model
extends java.lang.Object
implements java.io.Serializable

An internal utility class for StructureImpl to make it easier to manage poly and nonpoly chains. Not to exposed to users through API. Created by andreas on 5/3/16.

Since:

5.0

Author:

Andreas Prlic

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
Model()

Method Summary

Modifier and Type	Method and Description
void	addChain(Chain c)
java.util.List<Chain>	getChains() Get all chains: polymeric, non-polymeric and water
java.util.List<Chain>	getNonPolyChains()
java.util.List<Chain>	getPolyChains()
java.util.List<Chain>	getWaterChains()
void	setChains(java.util.List<Chain> modelChains)
int	size() Returns the total number of chains in this model: polymeric, non-polymeric and water
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Model

public Model()

Method Detail

getPolyChains

public java.util.List<Chain> getPolyChains()

getNonPolyChains

public java.util.List<Chain> getNonPolyChains()

getWaterChains

public java.util.List<Chain> getWaterChains()

getChains

public java.util.List<Chain> getChains()

Get all chains: polymeric, non-polymeric and water

Returns:

setChains

public void setChains(java.util.List<Chain> modelChains)

addChain

public void addChain(Chain c)

size

public int size()

Returns the total number of chains in this model: polymeric, non-polymeric and water

Returns:

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object